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Report for CCDS19400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19400.1 Public Mus musculus 5 Enam 23 108 98 CCDS HistoryNCBI Gene:13801Re-query CCDS DB by CCDS ID:19400.1Re-query CCDS DB by GeneID:13801See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 19400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031222.8 ENSMUSP00000031222.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031222.8Link to Ensembl Protein Viewer:ENSMUSP00000031222.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031222Re-query CCDS DB by Protein ID:ENSMUSP00000031222
Original member Current member NCBI NM_017468.3 NP_059496.1 Accepted alive Link to Nucleotide Sequence:NM_017468.3Link to Protein Sequence:NP_059496.1Re-query CCDS DB by Nucleotide ID:NM_017468Re-query CCDS DB by Protein ID:NP_059496Link to BLAST:NP_059496.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_059496.1 1274 O55196 1274 100% 0 0

Chromosomal Locations for CCDS 19400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 88488716 88488769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88489498 88489563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88489670 88489720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88491222 88491263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88492919 88493191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88494040 88494102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88498616 88498666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 88501459 88504683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3825 nt):
ATGTTGCTGCTTCAGTGCAGAAATCCGACTTCTCCTCCAAAGCCATGTGGCCTGGTACCAAATGTAAAGA
TGAGTCTCCTTGTTTTCCTGGGTCTGCTTGGTGTCTCTGCTGCCATGCCATTCCAGATGCCAATGCCCCG
AATGCCTGGATTTAGCAGTAAAAGTGAAGAGATGATGCGATATAATCAATTCAACTTCATGAATGCCCCA
CCAATGATGCCTATGGGCCCATATGGAAATGGTATGCCAATGCCGCCACACATGCCTCCACAGTACCCTC
CATACCAGATGCCCATGTGGCCTCCACCAGTACCCAATGGATGGCAGCAACCCCCAATGCCCAATTTCCC
AAGCAAGACTGATCAAACCCAGGAGACCGCCAAACCCAACCAGACCAATCCACAAGAGCCACAGCCACAA
AAGCAGCCTTTAAAGGAACCACCAAATGAAGCAGCACGGGCCAAAGATGACGCCCAGCCACCTCAGCCAT
TCCCACCATTTGGCAATGGACTTTACCCCTATCCACAACCACCATGGCCAATTCCACAGAGGGGACCACC
AACAGCGTTTGGACGGCCAAAGTTCAGCAATGAAGAAGGAAATCCTTACTATGCATTTTTTGGATATCAC
GGCTTTGGGGGTCGTCCTTATTACTCAGAAGAGATGTTTGAAGATTATGAAAAACCCAAAGAAAAAGACC
CTCCTAAACCAGAGGACCCACCTCCAGATGACCCACCCCCAGAGGCCTCTACAAACTCAACTGTGCCTGA
TGCTAATGCCACTCAATCAATTCCTGAAGGCGGAAATGACACTAGCCCAATAGGAAACACAGGCCCTGGG
CCGAACGCTGGGAACAATCCTACAGTTCAAAACGGTGTCTTCCCTCCCCCTAAAGTTAATGTTTCAGGCC
AGGGAGTACCAAAAAGCCAAATTCCGTGGAGACCAAGTCAGCCAAATATTTATGAGAATTATCCTTACCC
AAATTATCCTTCAGAAAGACAATGGCAAACCACTGGTACCCAGGGGCCTAGACAGAATGGACCTGGCTAC
CGAAATCCACAAGTTGAAAGGGGTCCTCAGTGGAATTCCTTTGCTTGGGAAGGCAAACAAGCTACTCGTC
CAGGAAACCCAACTTACGGTAAACCTCCCTCTCCTACCTCCGGGGTTAATTATGCAGGAAATCCAGTCCA
TTTCGGAAGAAACCTGCCAGGGCCAAATAAACCCTTTGTGGGAGCCAATCCGGCCTCAAATAAACCCTTT
GTGGGAGCCAATCCGGCCTCAAACAAACCCTTTGTGGGAGCTAATCCGGCCTCAAACAAACCCTTTGTGG
GAGCCAATCCGGCCTCAAATAAACCCTTTGTGGGAGCCAATCCGGCCTCAAATAAACCCTATGTGGGAGC
CAATCCGGCCTCAAACAAACCCTTTATAGGAGCCAATCCGGCTGCAAACAAACCATCTATAGGAACCAAT
CCAGCCGCAAACAAACCATCTATAGGAACCAATCCAGCTGCAAATAAACCCTTTGTGAGAAACAATGTAG
GTGCAAATAAACCCTTTGTGGGAACCAATCCCTCCTCAAACCAACCATTTCTGAGAAGCAATCAGGCCTC
AAATAAACCATTTATGAGAAGCAATCAGGCCTCAAATAAACCATTTGTGGGCACCAATGTGGCCTCAGTG
GGTCCTAAACAGGTCACTGTTAGCCACAATATGAAAACTCAAAATCCAAAAGAAAAGTCACTAGGTCAAA
AAGAAAGAACAGTCACTCCTACCAAAGATGCAAGCAACCCCTGGAGAAGTGCTAAACAATATGGAATTAA
CAATCCAAACTATAATTTGCCTCGCTCTGAGGGCAGCATGGTAGGCCCAAATTTTAATTCCTTTGATCAA
CAAGAAAACTCCTACTTCTCAAAAGGAGCTTCCAAAAGAGTACCAAGTCCTAATATACAAATCCAAAGCC
AGAATTTGCCCAAAGGAATTGCTTTAGAGCCAAGAAGAACCCCATTTCAATCAGAAACTAAAAAACCTGA
GTTAAAACATGGTACACACCAGCCTGCATACCCTAAGAAAATCCCTTCTCCTACAAGAAAACATTTCCCT
GCTGAAAGAAATACCTGGAATCGTCAAAAAATCCTTCCACCCTTAAAGGAAGACTATGGGAGGCAAGACG
AAAATTTACGTCATCCGTCCTATGGCTCTAGAGGAAATATTTTTTACCATGAATATACCAATCCTTATCA
TAATGAAAAATCACAGTACATTAAAAGCAATCCATGGGATAAGAGCTCTCCCAGTACTATGATGCGGCCA
GAAAACCCACAGTACACCATGACTTCTCTAGACCAGAAGGAGACAGAGCAGTACAATGAAGAGGATCCAA
TTGATCCAAATGAAGATGAATCTTTTCCAGGACAAAGTAGATGGGGGGATGAAGAGATGAACTTCAAAGG
AAACCCAACAGTTAGGCAGTATGAAGGTGAGCACTACGCCTCAACCCTAGCGAAGGAATACCTTCCTTAT
TCCTTAAGTAATCCACCAAAACCCAGTGAAGATTTTCCTTACAGTGAATTCTATCCCTGGAACCCACAGG
AAACGTTTCCAATATATAACCCAGGTCCTACTATAGCACCACCCGTGGACCCCAGAAGTTATTATGTTAA
TAATGCCATAGGACAAGAAGAAAGCACTCTCTTTCCTTCATGGACCTCCTGGGACCACAGGAATCAAGCT
GAGAGGCAGAAAGAGAGTGAGCCATATTTTAACAGAAATGTCTGGGATCAGTCAATAAATTTACACAAAT
CTAATATACCAAACCATCCTTATTCCACTACATCCCCTGCTAGATTTCCAAAAGATCCAACATGGTTTGA
AGGTGAGAATTTGAACTATGATTTGCAAATTACTAGTTTAAGTCCACCAGAAAGAGAACAGTTGGCTTTC
CCAGACTTCCTGCCTCAAAGTTACCCAACAGGTCAAAATGAAGCACACTTATTTCACCAAAGTCAAAGAG
GGTCTTGCTGTATTGGTGGCTCCACAGGACATAAAGACAATGTGCTGGCTCTACAAGACTACACTTCATC
CTATGGTCTTCCACCAAGGAAGAACCAAGAAACCAGTCCAGTGCATACAGAAAGCAGTTATATCAAGTAT
GCAAGACCTAACGTTTCCCCAGCAAGCATCCTACCTAGTCAAAGAAATATCTCAGAGAACAAACTAACTG
CAGAAAGCCCAAACCCAAGTCCATTTGGAGATGGTGTGCCTACTGTGAGGAAAAATACTCCATATTCTGG
AAAGAATCAACTAGAGACAGGAATTGTGGCCTTTTCTGAAGCCAGCTCTTCTCAGCCAAAAAACACGCCC
TGTCTTAAAAGTGACCTTGGAGGAGATCGGAGGGATGTTCTGAAACAATTTTTTGAAGGCAGCCAGCTGA
GTGAAAGAACTGCTGGCCTTACTCCTGAGCAGCTCGTCATTGGTATTCCTGATAAAGGCTCTGGCCCAGA
TAGCATACAAAGTGAAGTCCAAGGAAAAGAGGGTGAGATGCAGCAACAAAGGCCACCTACCATCATGAAG
TTGCCATGCTTTGGCTCCAATTCAAAATTTCACTCTTCTACCACTGGACCTCCAATTAACAACAGAAGAC
CAACCCTACTTAATGGTGCTCTCTCCACACCCACTGAAAGTCCTAACACATTGGTTGGGTTAGCTACTAG
GGAACAACTTAAAAGTATAAACGTAGATAAACTTAATGCAGATGAACACACTACACTCGAATCTTTTCAA
GGAACCAGTCCACAGGACCAAGGCTGCTTACTGCTTCAGGCTTAG

Translation (1274 aa):
MLLLQCRNPTSPPKPCGLVPNVKMSLLVFLGLLGVSAAMPFQMPMPRMPGFSSKSEEMMRYNQFNFMNAP
PMMPMGPYGNGMPMPPHMPPQYPPYQMPMWPPPVPNGWQQPPMPNFPSKTDQTQETAKPNQTNPQEPQPQ
KQPLKEPPNEAARAKDDAQPPQPFPPFGNGLYPYPQPPWPIPQRGPPTAFGRPKFSNEEGNPYYAFFGYH
GFGGRPYYSEEMFEDYEKPKEKDPPKPEDPPPDDPPPEASTNSTVPDANATQSIPEGGNDTSPIGNTGPG
PNAGNNPTVQNGVFPPPKVNVSGQGVPKSQIPWRPSQPNIYENYPYPNYPSERQWQTTGTQGPRQNGPGY
RNPQVERGPQWNSFAWEGKQATRPGNPTYGKPPSPTSGVNYAGNPVHFGRNLPGPNKPFVGANPASNKPF
VGANPASNKPFVGANPASNKPFVGANPASNKPFVGANPASNKPYVGANPASNKPFIGANPAANKPSIGTN
PAANKPSIGTNPAANKPFVRNNVGANKPFVGTNPSSNQPFLRSNQASNKPFMRSNQASNKPFVGTNVASV
GPKQVTVSHNMKTQNPKEKSLGQKERTVTPTKDASNPWRSAKQYGINNPNYNLPRSEGSMVGPNFNSFDQ
QENSYFSKGASKRVPSPNIQIQSQNLPKGIALEPRRTPFQSETKKPELKHGTHQPAYPKKIPSPTRKHFP
AERNTWNRQKILPPLKEDYGRQDENLRHPSYGSRGNIFYHEYTNPYHNEKSQYIKSNPWDKSSPSTMMRP
ENPQYTMTSLDQKETEQYNEEDPIDPNEDESFPGQSRWGDEEMNFKGNPTVRQYEGEHYASTLAKEYLPY
SLSNPPKPSEDFPYSEFYPWNPQETFPIYNPGPTIAPPVDPRSYYVNNAIGQEESTLFPSWTSWDHRNQA
ERQKESEPYFNRNVWDQSINLHKSNIPNHPYSTTSPARFPKDPTWFEGENLNYDLQITSLSPPEREQLAF
PDFLPQSYPTGQNEAHLFHQSQRGSCCIGGSTGHKDNVLALQDYTSSYGLPPRKNQETSPVHTESSYIKY
ARPNVSPASILPSQRNISENKLTAESPNPSPFGDGVPTVRKNTPYSGKNQLETGIVAFSEASSSQPKNTP
CLKSDLGGDRRDVLKQFFEGSQLSERTAGLTPEQLVIGIPDKGSGPDSIQSEVQGKEGEMQQQRPPTIMK
LPCFGSNSKFHSSTTGPPINNRRPTLLNGALSTPTESPNTLVGLATREQLKSINVDKLNADEHTTLESFQ
GTSPQDQGCLLLQA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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