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Report for CCDS19376.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19376.1 Public Mus musculus 5 Epha5 23 108 98 CCDS HistoryNCBI Gene:13839Re-query CCDS DB by CCDS ID:19376.1Re-query CCDS DB by GeneID:13839See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19376.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000053733.14 ENSMUSP00000060646.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000053733.14Link to Ensembl Protein Viewer:ENSMUSP00000060646.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000053733Re-query CCDS DB by Protein ID:ENSMUSP00000060646
Original member Current member NCBI NM_007937.3 NP_031963.2 Accepted alive Link to Nucleotide Sequence:NM_007937.3Link to Protein Sequence:NP_031963.2Re-query CCDS DB by Nucleotide ID:NM_007937Re-query CCDS DB by Protein ID:NP_031963Link to BLAST:NP_031963.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031963.2 876 Q60629 876 100% 0 0

Chromosomal Locations for CCDS 19376.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 84059042 84059147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84067360 84067515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84071044 84071237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84081067 84081216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84084706 84084915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84086358 84086419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84105849 84106034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84106689 84106814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84107989 84108056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84117561 84117626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84142278 84142383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84150342 84150501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84156412 84156536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84331228 84331891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84386219 84386283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 84416319 84416505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2631 nt):
ATGCGGGGCTCCGGGCCCCGCGGTGCGGGACACCGACGGACCCAGGGCAGAGGTGGCGGCGACGACACCC
CCCGCGTCCCTGCCTCTCTGGCAGGCTGCTATTCGGCACCTCTAAAGGGCCCCCTCTGGACGTGCCTTCT
CTTGTGTGCGGCGCTCCGGACCCTTTTGGCCAGCCCCAGCAACGAAGTGAATTTGTTGGATTCGCGCACT
GTCATGGGGGACCTTGGATGGATTGCTTTTCCAAAGAACGGGTGGGAAGAGATTGGTGAAGTTGATGAGA
ACTATGCCCCCATCCACACATACCAAGTGTGCAAAGTTATGGAACAGAATCAGAATAATTGGCTGTTGAC
CAGTTGGATCTCTAACGAAGGTGCTTCCAGAATCTTTATTGAACTCAAGTTTACTTTAAGGGACTGCAAC
AGCCTTCCTGGAGGACTGGGGACTTGTAAGGAGACATTTAACATGTATTATTTTGAATCAGATGATGAGA
ATGGGAGAAGTATCAAAGAGAACCAATACATCAAGATTGATACCATCGCTGCAGATGAGAGCTTCACAGA
ACTTGATCTTGGTGACCGTGTCATGAAACTGAATACAGAGGTCAGAGATGTCGGACCTCTGAGCAAAAAG
GGATTTTATCTTGCTTTCCAAGATGTCGGTGCTTGCATTGCTCTGGTTTCTGTCCGTGTCTACTATAAAA
AGTGTCCCTCTGTAGTAAGACACTTGGCTATCTTCCCTGACACTATCACTGGAGCAGATTCATCACAGTT
GTTAGAGGTGTCAGGCTCCTGCGTCAACCATTCTGTGACAGATGATCCTCCCAAGATGCATTGCAGTGCT
GAAGGGGAGTGGCTGGTTCCCATTGGGAAATGCATGTGCAAGGCTGGATATGAAGAGAAAAATGGTACCT
GCCAAGCTCCTTCTCCAGTCACCAATGTGAAAAAGGGGAAGATTGCAAAGAACAGCATTTCTTTGTCTTG
GCAAGAGCCAGATCGCCCCAATGGAATTATCCTGGAGTATGAAATCAAGTACTTTGAAAAGGACCAAGAG
ACCAGTTACACAATTATCAAGTCTAAAGAGACCAGTATTACAGCCGAGGGCCTGAAACCTGCATCTGTGT
ATGTCTTCCAAATTCGAGCACGTACAGCAGCAGGCTACGGCGTCTTCAGTCGAAGATTTGAGTTTGAAAC
CACACCAGTGTCAGTTGCAGCATCTAATGATCAAAGCCAGATTCCCATCATTGCAGTGTCAGTGACAGTG
GGAGTCATCTTGTTGGCAGTGATGATCGGCTTCCTCCTCAGTGGCAGTTGCTGCGATTGTGGCTGTGGGA
GGGCTTCTTCCCTGTGCGCTGTTGCCCATCCAAGCCTAATATGGCGGTGTGGCTACAGCAAAGCAAAGCA
GGATCCAGAAGAGGAAAAGATGCACTTTCATAACGGGCACATTAAACTGCCAGGAGTCAGAACCTATATT
GATCCGCACACTTATGAAGATCCCAATCAAGCTGTTCATGAATTTGCGAAGGAGATTGAAGCTTCATGCA
TCACCATTGAGAGAGTGATCGGAGCAGGTGAATTTGGTGAAGTTTGCAGTGGACGTTTGAAACTACCTGG
AAAAAGAGAATTACCTGTGGCTATCAAAACTCTTAAAGTAGGCTATACTGAAAAGCAGCGCAGAGATTTC
CTGGGTGAAGCAAGTATTATGGGGCAGTTCGATCATCCAAACATCATCCATCTAGAAGGTGTTGTGACTA
AAAGCAAACCTGTGATGATAGTGACAGAGTACATGGAGAACGGCTCCTTAGACACGTTTTTAAAGAAAAA
CGATGGGCAGTTCACTGTGATTCAGCTTGTTGGCATGCTGAGAGGCATCGCTGCAGGAATGAAGTACCTT
TCTGACATGGGCTACGTGCATAGAGACCTTGCTGCTAGAAACATCTTAATCAACAGTAACCTTGTGTGCA
AGGTGTCTGACTTTGGACTTTCCAGGGTACTGGAAGATGATCCTGAGGCAGCCTACACCACAAGGGGAGG
CAAAATTCCAATCAGATGGACTGCCCCGGAGGCAATAGCTTTTCGAAAGTTCACCTCTTCCAGTGATGTC
TGGAGCTATGGCATTGTAATGTGGGAAGTTGTATCTTATGGAGAGAGACCCTACTGGGAGATGACCAATC
AGGATGTGATCAAGGCAGTAGAAGAAGGCTACCGCCTGCCAAGCCCCATGGATTGCCCTGCTGCTCTCTA
TCAATTAATGCTGGATTGCTGGCAGAAAGATCGAAACAGCAGGCCCAAGTTTGATGAAATCGTCAACATG
CTGGACAAACTGATACGAAACCCAAGTAGTCTGAAGACACTGGTGAATGCGTCGAGCAGAGTGTCTACAT
TGTTGGCAGAACATGGTTCTTTGGGGTCTGGGGCCTACAGATCAGTAGGTGAATGGCTGGAAGCAATCAA
AATGGGTCGGTACACAGAGATTTTCATGGAAAATGGATACAGTTCAATGGACGCTGTGGCTCAGGTGACC
TTGGAGGATTTGAGGCGCCTGGGAGTGACTCTGGTCGGTCACCAGAAGAAGATCATGAGCAGCCTTCAAG
AGATGAAGGTGCAGATGGTAAACGGGATGGTGCCAGTGTGA

Translation (876 aa):
MRGSGPRGAGHRRTQGRGGGDDTPRVPASLAGCYSAPLKGPLWTCLLLCAALRTLLASPSNEVNLLDSRT
VMGDLGWIAFPKNGWEEIGEVDENYAPIHTYQVCKVMEQNQNNWLLTSWISNEGASRIFIELKFTLRDCN
SLPGGLGTCKETFNMYYFESDDENGRSIKENQYIKIDTIAADESFTELDLGDRVMKLNTEVRDVGPLSKK
GFYLAFQDVGACIALVSVRVYYKKCPSVVRHLAIFPDTITGADSSQLLEVSGSCVNHSVTDDPPKMHCSA
EGEWLVPIGKCMCKAGYEEKNGTCQAPSPVTNVKKGKIAKNSISLSWQEPDRPNGIILEYEIKYFEKDQE
TSYTIIKSKETSITAEGLKPASVYVFQIRARTAAGYGVFSRRFEFETTPVSVAASNDQSQIPIIAVSVTV
GVILLAVMIGFLLSGSCCDCGCGRASSLCAVAHPSLIWRCGYSKAKQDPEEEKMHFHNGHIKLPGVRTYI
DPHTYEDPNQAVHEFAKEIEASCITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDF
LGEASIMGQFDHPNIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGIAAGMKYL
SDMGYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRKFTSSSDV
WSYGIVMWEVVSYGERPYWEMTNQDVIKAVEEGYRLPSPMDCPAALYQLMLDCWQKDRNSRPKFDEIVNM
LDKLIRNPSSLKTLVNASSRVSTLLAEHGSLGSGAYRSVGEWLEAIKMGRYTEIFMENGYSSMDAVAQVT
LEDLRRLGVTLVGHQKKIMSSLQEMKVQMVNGMVPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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