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Report for CCDS19369.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19369.1 Public Mus musculus 5 Spmap2l 23 108 98 CCDS HistoryNCBI Gene:71868Re-query CCDS DB by CCDS ID:19369.1Re-query CCDS DB by GeneID:71868See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19369.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031161.10 ENSMUSP00000031161.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031161.10Link to Ensembl Protein Viewer:ENSMUSP00000031161.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031161Re-query CCDS DB by Protein ID:ENSMUSP00000031161
Original member Current member EBI ENSMUST00000117880.7 ENSMUSP00000112814.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117880.7Link to Ensembl Protein Viewer:ENSMUSP00000112814.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117880Re-query CCDS DB by Protein ID:ENSMUSP00000112814
Original member NCBI NM_027970.1 NP_082246.1 Updated not alive Link to Nucleotide Sequence:NM_027970.1Link to Protein Sequence:NP_082246.1Re-query CCDS DB by Nucleotide ID:NM_027970Re-query CCDS DB by Protein ID:NP_082246
Current member NCBI NM_027970.2 NP_082246.1 Accepted alive Link to Nucleotide Sequence:NM_027970.2Link to Protein Sequence:NP_082246.1Re-query CCDS DB by Nucleotide ID:NM_027970Re-query CCDS DB by Protein ID:NP_082246Link to BLAST:NP_082246.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082246.1 459 Q9DA15 459 100% 0 0

Chromosomal Locations for CCDS 19369.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 77016152 77016638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77042096 77042129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77044016 77044081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77047148 77047276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77054450 77054587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77055981 77056083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77059354 77059485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77060716 77060891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 77061198 77061312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGAGGAAGGAGACTTCTCAGGTTCATCCGTGCGATCCGAGGTGACGGATGGGCGGAACACCACGACCA
CGACAGAAACACGCACAACCTCTGAACTCCAACCGAAGCCCCTTGTGCTCAGGCTCCTGGAGGTGCAGAA
TGGTGACGAGGCCGAAGCGGTTGGGGAGGAAGGACAAGAAGAGGACTACGAAGGGTCCAAGACTCACAAA
TCCCATGAGGTCTCCGCATCCTTCAGATCCCACAACTCCAGCGATCCTCCCCAGTCCCGCAAGGCCAGTG
ATTCCCTCCGGTCTCGCAAGGGCATTGAGCCCCTGGAGCCCCGCAAGACCAGTGATTCCTTCCGGTCCCT
AATGGGCAGTGATCCCCTTCAGTCATCCGAGCGCCAGGAGGATGGAAAAGATGATTTGTTTCCCAACGCA
GTGATTATGACCTCCCCATCTTTGATAGCCAGATACCTACCACGGCTCCAGCTGGCTTCTCTGAGAGCAC
ACCCAGTTACCCGTGACCTTGTAAAGAAATGTTTTTATTCTAGGAAAAGAGTTCAAGATCTTTCTAAACC
GAAAAAGCAATGGGGAACTCCGGACAGGAGGCTGTTTTGGGGAAATCAAGATCCCATTCGCCCTGTTTCT
GAGGCTGCTTTGAAAGCTAAGCTATCCAAGAGAATTGAGGACCTTGCTCAGCCCAGGCTGGTCTCCCGAC
ATTATGTCCCTAACAGAATTCAATATTACTACAGCTGCGGAAGAGAGTCTGTTATCTGGGAGATCTCTCC
TCCTGCGCTGGTTACCCGGCCTTCCAAACGGATCCAGAAGCTGGCCAAACCCAACAAATTCAAAGCACAG
AGTCTGATAAAGAGAGAAACCGTACCAGGCACCACTCGTTACTCTGATCCTTCTCCCCGGATTCTGCGAC
TCTCCATCGCCAAAGGCACCAATCCCAGCTACCTTCCTCCAAAGACCTTGGAAACCAAGATTTCCTTCTC
TACCCTGAGTGCTGTTGCAACTCCAAGGATTGTAGACCTTGCCCACCCAAGGATTAAGATAGAGGGCCTA
TGCTATGAAAGAGAAAGGAGTGAATTGCCCATCCGTCCCGTAGCCCCTGCTGCCCTACTTGCTAATCCTA
GTAAAAGAACGATATTTCTAGCAAAGTCCAAGCGTGTTCATGAAGACTATCTCCCTATCCGAGATGCTCG
GTGGCCTGTATCTTACGCTGCGACTCATTCTCAGGTGTCTGAGAGAGTCCAGGAGTTAGCTAATCCACAC
ACAAGGGGTCCAGCGAACCTTGTATACTACGACCCAAACGTCTTTAAAGTCAAGCCTTCTGCTTTAAAAG
CACACTGTTCCGACAGGGTCAAGGAGCTGGCGGAACCCATTGTGCGTTAA

Translation (459 aa):
MEEGDFSGSSVRSEVTDGRNTTTTTETRTTSELQPKPLVLRLLEVQNGDEAEAVGEEGQEEDYEGSKTHK
SHEVSASFRSHNSSDPPQSRKASDSLRSRKGIEPLEPRKTSDSFRSLMGSDPLQSSERQEDGKDDLFPNA
VIMTSPSLIARYLPRLQLASLRAHPVTRDLVKKCFYSRKRVQDLSKPKKQWGTPDRRLFWGNQDPIRPVS
EAALKAKLSKRIEDLAQPRLVSRHYVPNRIQYYYSCGRESVIWEISPPALVTRPSKRIQKLAKPNKFKAQ
SLIKRETVPGTTRYSDPSPRILRLSIAKGTNPSYLPPKTLETKISFSTLSAVATPRIVDLAHPRIKIEGL
CYERERSELPIRPVAPAALLANPSKRTIFLAKSKRVHEDYLPIRDARWPVSYAATHSQVSERVQELANPH
TRGPANLVYYDPNVFKVKPSALKAHCSDRVKELAEPIVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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