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Report for CCDS19351.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19351.1 Public Mus musculus 5 Pdgfra 23 108 98 CCDS HistoryNCBI Gene:18595Re-query CCDS DB by CCDS ID:19351.1Re-query CCDS DB by GeneID:18595See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19351.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000476.14 ENSMUSP00000000476.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000476.14Link to Ensembl Protein Viewer:ENSMUSP00000000476.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000000476Re-query CCDS DB by Protein ID:ENSMUSP00000000476
Original member Current member EBI ENSMUST00000168162.4 ENSMUSP00000127173.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168162.4Link to Ensembl Protein Viewer:ENSMUSP00000127173.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168162Re-query CCDS DB by Protein ID:ENSMUSP00000127173
Original member Current member NCBI NM_001083316.2 NP_001076785.1 Accepted alive Link to Nucleotide Sequence:NM_001083316.2Link to Protein Sequence:NP_001076785.1Re-query CCDS DB by Nucleotide ID:NM_001083316Re-query CCDS DB by Protein ID:NP_001076785Link to BLAST:NP_001076785.1
Original member Current member NCBI NM_011058.3 NP_035188.2 Accepted alive Link to Nucleotide Sequence:NM_011058.3Link to Protein Sequence:NP_035188.2Re-query CCDS DB by Nucleotide ID:NM_011058Re-query CCDS DB by Protein ID:NP_035188Link to BLAST:NP_035188.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076785.1 1089 P26618-1 1089 100% 0 0
NP_035188.2 1089 P26618-1 1089 100% 0 0

Chromosomal Locations for CCDS 19351.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 75162243 75162291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75163535 75163852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75166511 75166771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75167837 75167967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75170495 75170666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75170762 75170951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75173389 75173504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75174945 75175071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75176667 75176860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75177645 75177739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75177930 75178062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75180168 75180272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75180999 75181109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75181522 75181675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75182976 75183142 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75185514 75185629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75185951 75186073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75187863 75187974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75189020 75189119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75189231 75189336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75192431 75192672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 75194953 75195100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3270 nt):
ATGGGGACCTCCCACCAGGTCTTTCTGGTCCTCAGCTGTCTCCTCACAGGGCCGGGCCTCATCTCCTGCC
AGCTCTTATTACCCTCTATCCTCCCAAACGAGAATGAGAAGATTGTGCAGCTGAATTCGTCCTTTTCTCT
GAGATGCGTTGGGGAGAGTGAAGTGAGCTGGCAGCACCCCATGTCTGAAGAAGACGACCCCAACGTGGAA
ATCAGAAGTGAGGAGAACAACAGTGGCCTCTTTGTCACAGTGCTGGAAGTGGTTAACGCCTCCGCAGCCC
ACACCGGATGGTACACTTGCTACTACAACCACACTCAGACGGATGAGAGTGAGATCGAAGGCAGGCACAT
TTACATCTATGTACCAGACCCAGACATGGCCTTTGTGCCTCTCGGGATGACCGATTCCTTAGTCATCGTG
GAAGAGGATGACTCTGCCATCATACCTTGCCGCACCACAGATCCGGAGACTCAAGTAACCTTGCACAATA
ACGGGAGGCTGGTGCCTGCCTCCTATGACAGCAGGCAGGGCTTCAACGGAACCTTCAGCGTGGGGCCTTA
CATCTGTGAGGCCACCGTCAAAGGGAGGACGTTCAAGACCAGCGAGTTTAATGTTTATGCCTTGAAAGCA
ACGTCAGAACTGAATCTGGAGATGGACGCACGCCAGACTGTGTATAAGGCAGGAGAAACGATCGTGGTGA
CCTGTGCCGTCTTTAACAACGAGGTCGTTGACCTGCAGTGGACTTACCCTGGAGAAGTGAGAAACAAAGG
TATCACCATGCTGGAGGAGATCAAACTCCCATCCATCAAACTGGTGTACACTTTGACCGTCCCCAAGGCC
ACGGTGAAGGACAGTGGAGAGTATGAATGTGCTGCCCGTCAGGCCACTAAAGAGGTCAAGGAAATGAAGA
GAGTCACCATTTCTGTCCACGAGAAAGGCTTCGTCGAGATTGAGCCCACCTTTGGCCAGCTGGAAGCTGT
CAACTTGCACGAAGTCAGAGAGTTCGTGGTGGAGGTGCAGGCCTACCCGACGCCCAGGATATCGTGGCTG
AAGGACAACTTGACTCTGATAGAGAATCTCACCGAGATCACCACTGATGTACAGAAGAGTCAGGAAACAA
GGTATCAGAGCAAATTAAAGCTGATCCGGGCTAAGGAAGAAGACAGTGGCCATTACACCATTATAGTTCA
AAATGAGGATGACGTGAAGAGTTACACGTTTGAGCTGTCAACCCTAGTTCCTGCATCCATTTTGGATCTC
GTAGATGACCACCATGGCTCTGGCGGGGGACAGACTGTGAGGTGTACAGCCGAAGGCACCCCTCTTCCAG
AAATCGACTGGATGATCTGCAAGCATATTAAGAAATGTAATAATGACACTTCGTGGACAGTTTTGGCCAG
CAATGTCTCAAATATTATCACAGAGCTCCCTCGCCGTGGCAGGAGTACCGTGGAGGGACGAGTGTCCTTC
GCCAAAGTGGAAGAGACCATCGCAGTTCGATGCCTGGCAAAGAACAACCTCAGCGTTGTGGCCCGTGAGC
TGAAGCTGGTGGCTCCCACTCTGCGATCTGAACTCACAGTGGCGGCCGCAGTGTTGGTGCTGTTGGTGAT
TGTCATTGTCTCTCTCATCGTCCTGGTGGTCATTTGGAAGCAGAAACCACGGTATGAAATTCGCTGGAGG
GTTATCGAGTCAATCAGCCCCGATGGACATGAGTATATCTATGTGGACCCCATGCAGTTGCCTTACGACT
CCAGATGGGAATTCCCGAGAGATGGCCTCGTGCTTGGTCGGATTTTGGGATCCGGTGCATTTGGGAAAGT
GGTCGAAGGTACAGCTTATGGATTAAGCCGGTCCCAACCTGTAATGAAGGTGGCTGTGAAGATGCTCAAA
CCCACAGCCAGGTCTAGTGAAAAGCAGGCTCTCATGTCTGAGCTGAAGATAATGACTCACCTGGGGCCAC
ATTTGAACATTGTGAACTTGCTGGGAGCCTGCACCAAGTCAGGTCCCATTTACATCATCACAGAATACTG
CTTCTATGGGGATTTGGTCAACTACTTGCATAAGAACAGAGATAGCTTCATGAGCCAACACCCAGAGAAG
CCGAAGAAAGACCTGGACATCTTTGGATTGAATCCTGCAGACGAGAGCACAAGAAGTTATGTGATTTTGT
CTTTTGAAAATAACGGCGACTACATGGACATGAAGCAAGCTGATACCACACAGTATGTCCCCATGCTTGA
AAGGAAAGAGGTTTCTAAATACTCTGACATCCAGAGATCGCTGTACGATCGGCCAGCCTCCTACAAGAAG
AAATCCATGCTAGACTCAGAAGTCAAAAACCTCCTTTCGGACGATGACTCCGAGGGTCTGACTTTGCTGG
ATCTATTGAGCTTCACCTATCAAGTTGCTCGAGGAATGGAATTTTTGGCTTCGAAAAATTGTGTCCACCG
GGACCTGGCTGCCCGCAACGTCCTCCTGGCGCAAGGAAAAATTGTGAAGATCTGTGATTTTGGCCTGGCC
AGAGACATCATGCACGATTCCAACTACGTGTCAAAAGGCAGTACTTTCCTGCCTGTGAAGTGGATGGCAC
CCGAGAGCATCTTCGACAACCTCTACACCACGCTGAGTGACGTCTGGTCCTATGGCATTCTGCTCTGGGA
AATCTTTTCCCTTGGTGGCACACCCTATCCTGGCATGATGGTCGATTCTACTTTCTACAATAAGATCAAG
AGTGGATACCGGATGGCCAAACCTGACCATGCCACCAGTGAAGTCTATGAGATCATGGTGCAGTGCTGGA
ACAGTGAGCCCGAGAAGAGACCCTCCTTCTACCACCTCAGCGAGATAGTGGAGAACCTGTTGCCGGGACA
ATACAAGAAGAGTTATGAAAAGATTCACCTGGACTTCCTAAAGAGTGACCATCCGGCCGTGGCACGCATG
CGGGTGGACTCTGATAATGCGTACATCGGTGTCACTTACAAAAATGAAGAGGATAAGCTGAAGGACTGGG
AAGGTGGCCTGGACGAACAGAGACTGAGCGCTGACAGTGGCTACATCATCCCCCTGCCAGACATTGACCC
TGTTCCAGAGGAGGAAGACCTGGGCAAGAGGAACAGACACAGCTCACAGACTTCGGAAGAGAGTGCCATC
GAGACAGGTTCCAGTAGTTCCACCTTCATCAAGAGAGAGGACGAGACCATCGAGGACATCGACATGATGG
ATGACATTGGTATAGATTCCTCGGACCTGGTGGAGGACAGCTTCCTGTAA

Translation (1089 aa):
MGTSHQVFLVLSCLLTGPGLISCQLLLPSILPNENEKIVQLNSSFSLRCVGESEVSWQHPMSEEDDPNVE
IRSEENNSGLFVTVLEVVNASAAHTGWYTCYYNHTQTDESEIEGRHIYIYVPDPDMAFVPLGMTDSLVIV
EEDDSAIIPCRTTDPETQVTLHNNGRLVPASYDSRQGFNGTFSVGPYICEATVKGRTFKTSEFNVYALKA
TSELNLEMDARQTVYKAGETIVVTCAVFNNEVVDLQWTYPGEVRNKGITMLEEIKLPSIKLVYTLTVPKA
TVKDSGEYECAARQATKEVKEMKRVTISVHEKGFVEIEPTFGQLEAVNLHEVREFVVEVQAYPTPRISWL
KDNLTLIENLTEITTDVQKSQETRYQSKLKLIRAKEEDSGHYTIIVQNEDDVKSYTFELSTLVPASILDL
VDDHHGSGGGQTVRCTAEGTPLPEIDWMICKHIKKCNNDTSWTVLASNVSNIITELPRRGRSTVEGRVSF
AKVEETIAVRCLAKNNLSVVARELKLVAPTLRSELTVAAAVLVLLVIVIVSLIVLVVIWKQKPRYEIRWR
VIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLK
PTARSSEKQALMSELKIMTHLGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDSFMSQHPEK
PKKDLDIFGLNPADESTRSYVILSFENNGDYMDMKQADTTQYVPMLERKEVSKYSDIQRSLYDRPASYKK
KSMLDSEVKNLLSDDDSEGLTLLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLA
RDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMMVDSTFYNKIK
SGYRMAKPDHATSEVYEIMVQCWNSEPEKRPSFYHLSEIVENLLPGQYKKSYEKIHLDFLKSDHPAVARM
RVDSDNAYIGVTYKNEEDKLKDWEGGLDEQRLSADSGYIIPLPDIDPVPEEEDLGKRNRHSSQTSEESAI
ETGSSSSTFIKREDETIEDIDMMDDIGIDSSDLVEDSFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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