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Report for CCDS19339.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19339.1 Public Mus musculus 5 Ociad1 23 108 98 CCDS HistoryNCBI Gene:68095Re-query CCDS DB by CCDS ID:19339.1Re-query CCDS DB by GeneID:68095See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19339.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031038.10 ENSMUSP00000031038.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031038.10Link to Ensembl Protein Viewer:ENSMUSP00000031038.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000031038Re-query CCDS DB by Protein ID:ENSMUSP00000031038
Original member Current member NCBI NM_023429.4 NP_075918.1 Accepted alive Link to Nucleotide Sequence:NM_023429.4Link to Protein Sequence:NP_075918.1Re-query CCDS DB by Nucleotide ID:NM_023429Re-query CCDS DB by Protein ID:NP_075918Link to BLAST:NP_075918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075918.1 247 Q9CRD0-1 247 100% 0 0

Chromosomal Locations for CCDS 19339.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 73294290 73294347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73294926 73295006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73300664 73300717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73303592 73303639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73304549 73304684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73306578 73306753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73310274 73310426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 73313443 73313480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (744 nt):
ATGAATGGGAGGGCTGATTTTCGAGAACCGAATGCACAAGTGTCAAGACCTATTCCCGACATAGGAGGCG
GTTATATTCCGACAGAGGAGGAGTGGAGACTCTTTGCAGAGTGCCATGAAGAGTGCTTCTGGTTCAGATC
TGTGCCGTTGGCTGCCACAAGTATGCTGATTACTCAAGGATTAATTAGTAAAGGAATCCTGTCAAGTCAT
CCAAAATATGGTTCAATTCCTAAACTTCTATTCGCTTGTATCGTGGGGTACTTCGCTGGAAAGCTTTCTT
ACGTGAAAACGTGCCAAGAGAAGTTCAAGAAGCTTGAAAACTCCCCCCTTGGAGAAGCACTGCGGTCGGG
AGAATTGCGGCGCTCTTCTCCACCAGGGCACTATACTCAAAAGCCTAAATTTGACTCAAATGTGAGTGGT
CAGTCCTCTTTCGGGACATCTCCAGCAGCAGACAACATAGAAAAGGAGGCGCTTCCTCGTTATGAGCCAA
TTCCATTTAGTGCTTCTATGAACGAGTCCACTCCCACTGGTATTACTGACCATATTGCCCAAGGACCTGA
GCCCAACCTTGAAGAAAGTCCCAAAAGAAAAGGTGTTACATATGAGGAATTAAGGAGTAAGAACAGAGAG
TCCTATGGAGTAACTTTACCCCACAAGACTGACCCCTCAGTCAGGCCCATGCAGGAAAGAGTGCCCAAAA
AAGAAGTCAAAGTAAACAAATATGGAGATACTTGGGATGAGTGA

Translation (247 aa):
MNGRADFREPNAQVSRPIPDIGGGYIPTEEEWRLFAECHEECFWFRSVPLAATSMLITQGLISKGILSSH
PKYGSIPKLLFACIVGYFAGKLSYVKTCQEKFKKLENSPLGEALRSGELRRSSPPGHYTQKPKFDSNVSG
QSSFGTSPAADNIEKEALPRYEPIPFSASMNESTPTGITDHIAQGPEPNLEESPKRKGVTYEELRSKNRE
SYGVTLPHKTDPSVRPMQERVPKKEVKVNKYGDTWDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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