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Report for CCDS1922.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1922.1 Public Homo sapiens 2 SFXN5 24 110 108 CCDS HistoryNCBI Gene:94097Re-query CCDS DB by CCDS ID:1922.1Re-query CCDS DB by GeneID:94097See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1922.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272433.7 ENSP00000272433.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272433.7Link to Ensembl Protein Viewer:ENSP00000272433.2Re-query CCDS DB by Nucleotide ID:ENST00000272433Re-query CCDS DB by Protein ID:ENSP00000272433
Original member Current member NCBI NM_144579.3 NP_653180.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_144579.3Link to Protein Sequence:NP_653180.1Re-query CCDS DB by Nucleotide ID:NM_144579Re-query CCDS DB by Protein ID:NP_653180Link to BLAST:NP_653180.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_653180.1 340 Q8TD22 340 100% 0 0

Chromosomal Locations for CCDS 1922.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 72945022 72945099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72961131 72961248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72968448 72968533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72971570 72971685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72988258 72988348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72998949 72999014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73000431 73000487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73001525 73001578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73020239 73020264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73022522 73022576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73023188 73023214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73040854 73040931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73058528 73058596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 73071604 73071705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGGCGGATACAGCGACTACAGCATCGGCGGCGGCGGCTAGTGCCGCTAGCGCCTCGAGCGATGCACCTC
CTTTCCAACTGGGCAAACCCCGCTTCCAGCAGACGTCCTTCTATGGCCGCTTCAGGCACTTCTTGGATAT
CATCGACCCTCGCACACTCTTTGTCACTGAGAGACGTCTCAGAGAGGCTGTGCAGCTGCTGGAGGACTAT
AAGCATGGGACCCTGCGCCCGGGGGTCACCAATGAACAGCTCTGGAGTGCACAGAAAATCAAGCAGGCTA
TTCTACATCCGGACACCAATGAGAAGATCTTCATGCCATTTAGAATGTCAGGTTATATTCCTTTTGGGAC
GCCAATTGTAGTCGGTCTTCTCTTGCCCAACCAGACACTGGCATCCACTGTCTTCTGGCAGTGGCTGAAC
CAGAGCCACAATGCCTGTGTCAACTATGCAAACCGCAATGCGACCAAGCCTTCACCTGCATCCAAGTTCA
TCCAGGGATACCTGGGAGCTGTCATCAGCGCCGTCTCCATTGCTGTGGGCCTTAATGTCCTGGTTCAGAA
AGCCAACAAGTTCACCCCAGCCACCCGCCTTCTCATCCAGAGGTTTGTGCCGTTCCCTGCTGTAGCCAGT
GCCAATATCTGCAATGTGGTCCTGATGCGGTACGGGGAGCTGGAGGAAGGGATTGATGTCCTGGACAGCG
ATGGCAACCTCGTGGGCTCCTCCAAGATCGCAGCCCGACACGCCCTGCTGGAGACGGCGCTGACGCGAGT
GGTCCTGCCCATGCCCATCCTGGTGCTACCCCCGATCGTCATGTCCATGCTGGAGAAGACGGCTCTCCTG
CAGGCACGCCCCCGGCTGCTCCTCCCTGTGCAAAGCCTCGTGTGCCTGGCAGCCTTCGGCCTGGCCCTGC
CGCTGGCCATCAGCCTCTTCCCGCAAATGTCAGAGATTGAAACATCCCAATTAGAGCCGGAGATAGCCCA
GGCCACGAGCAGCCGGACAGTGGTGTACAACAAGGGGTTGTGA

Translation (340 aa):
MADTATTASAAAASAASASSDAPPFQLGKPRFQQTSFYGRFRHFLDIIDPRTLFVTERRLREAVQLLEDY
KHGTLRPGVTNEQLWSAQKIKQAILHPDTNEKIFMPFRMSGYIPFGTPIVVGLLLPNQTLASTVFWQWLN
QSHNACVNYANRNATKPSPASKFIQGYLGAVISAVSIAVGLNVLVQKANKFTPATRLLIQRFVPFPAVAS
ANICNVVLMRYGELEEGIDVLDSDGNLVGSSKIAARHALLETALTRVVLPMPILVLPPIVMSMLEKTALL
QARPRLLLPVQSLVCLAAFGLALPLAISLFPQMSEIETSQLEPEIAQATSSRTVVYNKGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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