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Report for CCDS1921.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1921.2 Public Homo sapiens 2 EMX1 24 110 108 CCDS HistoryNCBI Gene:2016Re-query CCDS DB by CCDS ID:1921.2Re-query CCDS DB by GeneID:2016See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 1921.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258106.11 ENSP00000258106.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258106.11Link to Ensembl Protein Viewer:ENSP00000258106.6Re-query CCDS DB by Nucleotide ID:ENST00000258106Re-query CCDS DB by Protein ID:ENSP00000258106
Original member Current member NCBI NM_004097.3 NP_004088.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004097.3Link to Protein Sequence:NP_004088.2Re-query CCDS DB by Nucleotide ID:NM_004097Re-query CCDS DB by Protein ID:NP_004088Link to BLAST:NP_004088.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004088.2 290 Q04741-1 290 100% 0 0

Chromosomal Locations for CCDS 1921.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 72917853 72918372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72924309 72924493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 72933787 72933954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (873 nt):
ATGTGCCTGGCTGGGTGCACACCCCGCAAGGCGGCGGCGCCAGGACGCGGAGCGCTCCCCAGAGCCCGGC
TGCCTCGCACAGCTCCCGCGGCTGCGACCATGTTCCAGCCCGCGGCCAAGCGCGGCTTTACCATAGAGTC
CTTGGTGGCCAAGGACGGCGGCACCGGCGGGGGCACTGGCGGCGGGGGCGCGGGCTCCCATCTCCTGGCG
GCGGCCGCCTCCGAGGAACCGCTCCGGCCCACGGCGCTCAACTACCCTCACCCCAGCGCGGCCGAGGCGG
CCTTCGTGAGTGGCTTCCCTGCCGCGGCCGCCGCGGGCGCGGGCCGCTCGCTCTACGGTGGGCCCGAGCT
CGTGTTCCCCGAGGCCATGAACCACCCCGCGCTGACCGTGCATCCGGCGCACCAGCTGGGCGCCTCCCCG
CTGCAGCCCCCGCACTCCTTCTTCGGCGCCCAGCACCGGGACCCTCTCCATTTCTACCCCTGGGTCCTGC
GGAACCGCTTCTTCGGCCACCGCTTCCAGGCCAGCGACGTGCCCCAGGACGGGCTGCTTCTGCACGGCCC
CTTCGCACGCAAGCCCAAGCGGATCCGCACGGCCTTCTCGCCCTCGCAGCTGCTGCGGCTGGAGCGCGCC
TTCGAGAAGAACCACTACGTGGTGGGCGCCGAGCGGAAGCAGCTGGCCGGCAGTCTCAGCCTCTCCGAGA
CGCAGGTGAAGGTGTGGTTCCAGAACCGGAGGACAAAGTACAAACGGCAGAAGCTGGAGGAGGAAGGGCC
TGAGTCCGAGCAGAAGAAGAAGGGCTCCCATCACATCAACCGGTGGCGCATTGCCACGAAGCAGGCCAAT
GGGGAGGACATCGATGTCACCTCCAATGACTAG

Translation (290 aa):
MCLAGCTPRKAAAPGRGALPRARLPRTAPAAATMFQPAAKRGFTIESLVAKDGGTGGGTGGGGAGSHLLA
AAASEEPLRPTALNYPHPSAAEAAFVSGFPAAAAAGAGRSLYGGPELVFPEAMNHPALTVHPAHQLGASP
LQPPHSFFGAQHRDPLHFYPWVLRNRFFGHRFQASDVPQDGLLLHGPFARKPKRIRTAFSPSQLLRLERA
FEKNHYVVGAERKQLAGSLSLSETQVKVWFQNRRTKYKRQKLEEEGPESEQKKKGSHHINRWRIATKQAN
GEDIDVTSND


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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