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Report for CCDS19173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19173.1 Public Mus musculus 5 Trim54 23 108 98 CCDS HistoryNCBI Gene:58522Re-query CCDS DB by CCDS ID:19173.1Re-query CCDS DB by GeneID:58522See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013771.14 ENSMUSP00000013771.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013771.14Link to Ensembl Protein Viewer:ENSMUSP00000013771.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000013771Re-query CCDS DB by Protein ID:ENSMUSP00000013771
Original member Current member NCBI NM_021447.2 NP_067422.1 Accepted alive Link to Nucleotide Sequence:NM_021447.2Link to Protein Sequence:NP_067422.1Re-query CCDS DB by Nucleotide ID:NM_021447Re-query CCDS DB by Protein ID:NP_067422Link to BLAST:NP_067422.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067422.1 366 Q9ERP3 366 100% 0 0

Chromosomal Locations for CCDS 19173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31116910 31117077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31131042 31131214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31131988 31132159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31134050 31134145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31136043 31136276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31136753 31136775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31136888 31137012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31137121 31137213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31137477 31137493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGAACTTCACGGTGGGTTTCAAGCCGCTGCTAGGGGATGCGCACAACATGGACAACTTGGAGAAGCAGC
TCATTTGCCCCATCTGCCTGGAGATGTTCTCCAAGCCCGTGGTGATCTTGCCCTGCCAACACAACCTGTG
CCGCAAGTGTGCCAACGACGTCTTCCAGGCCTCTAATCCTCTGTGGCAATCCCGGGGCTCCACAACGGTG
TCTTCAGGAGGACGTTTCCGATGCCCATCTTGTAGGCACGAGGTTGTCCTGGACAGGCATGGTGTCTATG
GCCTGCAGCGGAACCTGCTAGTGGAGAACATCATTGACATCTACAAGCAGGAGTCCTCCCGGCCACTGCA
CGCCAAGGCTGAACAGCACCTCATGTGTGAGGAGCACGAGGACGAGAAGATCAACATCTACTGCCTGAGC
TGCGAGGTGCCCACCTGCTCTCTCTGCAAGGTTTTCGGCGCCCACAAGGACTGTGAGGTGGCCCCTCTGC
CCACCATTTACAAACGCCAGAAGAGTGAGCTGAGCGATGGCATCGCGATGCTGGTGGCGGGCAATGACCG
TGTGCAGGCAGTGATCACCCAGATGGAGGAGGTGTGCCAGACCATTGAGGACAACAGCCGCAGACAGAAG
CAACTGTTAAACCAGAGGTTCGAGACCCTGTGCGCGGTTTTGGAGGAGCGCAAGGGCGAACTGCTTCAAG
CACTGGCCCGGGAGCAGGAGGAGAAGTTGCAGCGCGTGCGGGGCCTCATCCGCCAGTACGGAGACCACTT
GGAGGGCTCCTCAAAGCTGGTGGAGTCCGCCATCCAGTCCATGGAGGAGCCGCAGATGGCTCTCTACCTC
CAGCAGGCAAAGGAGCTGATCAACAAGGTCGGGGCAATGTCGAAGGTGGAGCTGGCAGGACGGCCGGAGC
CAGGCTATGAGAGCATGGAGCAATTCTCTGTGAGCGTGGAGCACGTGGCCGAAATGTTGCGAACCATCGA
CTTCCAGCCGGGCGCCGCTGGGGATGAAGAGGATGACGACATGGCTTTGGATGGGGAGGAGGGCAATGCG
GGGCTGGAGGAGGAGCGGCTGGACGTGCCAGAAGGCTCAGGCCTGCACTGA

Translation (366 aa):
MNFTVGFKPLLGDAHNMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNPLWQSRGSTTV
SSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHAKAEQHLMCEEHEDEKINIYCLS
CEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAMLVAGNDRVQAVITQMEEVCQTIEDNSRRQK
QLLNQRFETLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLEGSSKLVESAIQSMEEPQMALYL
QQAKELINKVGAMSKVELAGRPEPGYESMEQFSVSVEHVAEMLRTIDFQPGAAGDEEDDDMALDGEEGNA
GLEEERLDVPEGSGLH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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