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Report for CCDS19170.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19170.1 Public Mus musculus 5 Atraid 23 108 98 CCDS HistoryNCBI Gene:381629Re-query CCDS DB by CCDS ID:19170.1Re-query CCDS DB by GeneID:381629See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19170.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000013766.12 ENSMUSP00000013766.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000013766.12Link to Ensembl Protein Viewer:ENSMUSP00000013766.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000013766Re-query CCDS DB by Protein ID:ENSMUSP00000013766
Original member Current member NCBI NM_027855.4 NP_082131.2 Accepted alive Link to Nucleotide Sequence:NM_027855.4Link to Protein Sequence:NP_082131.2Re-query CCDS DB by Nucleotide ID:NM_027855Re-query CCDS DB by Protein ID:NP_082131Link to BLAST:NP_082131.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082131.2 223 Q6PGD0-1 223 100% 0 0

Chromosomal Locations for CCDS 19170.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 31048673 31048756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31049462 31049580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31052197 31052268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31052462 31052533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31052763 31052884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31053961 31054058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 31054263 31054367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (672 nt):
ATGGCGTCTCGGGAGTCAGGCGGCTCTCGGGCGGCCGCCCTGCTCCTGGTTCTGGGCGTGGAGAGGGCCC
TGGCTCTACCTGAGATATGCACCCTGTGTCCGGGAGGTATGCACAATTTGTCCAGAGTGGCTGCTTACTG
TGAGGATACATCGAAGCTAATGCAGGCCCGATGCTGCCTGAATCAGAAGGGCACCATCTTGGGGCTAGAT
CTTCAGAACTGTTCCCTGAAGGATCCTGGTCCAAACTTTTTACAGGCTTATACTGCTATTATCATAGACC
TTCAGGCAAATCCTCTCAAGGATGATTTGGCCAACACCTTCCGTGGGTTTACTCAGCTGCAGACTCTGAT
ACTACCACAAGATGTTCCCTGTCCTGGAGGTAGTAATGCCTGGGACAATGTTACTTCTTTCAAGGACAAG
CAGATTTGCCAAGGGCAAAGGGACCTTTGCAATAGCACTGGAAGCCCAGAAATGTGTCCTGAGAACGGAT
CTTGTGCATCTGACGGTCCTGGTCTTTTGCAGTGCGTTTGTGCTGATGGTTTCCATGGATACAAGTGTAT
GAGGCAGGGCTCATTTTCACTGCTTATGTTCTTTGGGATTCTGGGATCCACCACGCTAGCCATCTCCATT
CTACTTTGGGGAACCCAGCGCCGGAAAGCCAAGGCTTCATGA

Translation (223 aa):
MASRESGGSRAAALLLVLGVERALALPEICTLCPGGMHNLSRVAAYCEDTSKLMQARCCLNQKGTILGLD
LQNCSLKDPGPNFLQAYTAIIIDLQANPLKDDLANTFRGFTQLQTLILPQDVPCPGGSNAWDNVTSFKDK
QICQGQRDLCNSTGSPEMCPENGSCASDGPGLLQCVCADGFHGYKCMRQGSFSLLMFFGILGSTTLAISI
LLWGTQRRKAKAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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