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Report for CCDS19113.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19113.1 Public Mus musculus 5 Hycc1 23 108 98 CCDS HistoryNCBI Gene:84652Re-query CCDS DB by CCDS ID:19113.1Re-query CCDS DB by GeneID:84652See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19113.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030849.12 ENSMUSP00000030849.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030849.12Link to Ensembl Protein Viewer:ENSMUSP00000030849.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030849Re-query CCDS DB by Protein ID:ENSMUSP00000030849
Original member NCBI NM_053090.3 NP_444320.2 Updated not alive Link to Nucleotide Sequence:NM_053090.3Link to Protein Sequence:NP_444320.2Re-query CCDS DB by Nucleotide ID:NM_053090Re-query CCDS DB by Protein ID:NP_444320
Current member NCBI NM_053090.4 NP_444320.2 Accepted alive Link to Nucleotide Sequence:NM_053090.4Link to Protein Sequence:NP_444320.2Re-query CCDS DB by Nucleotide ID:NM_053090Re-query CCDS DB by Protein ID:NP_444320Link to BLAST:NP_444320.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444320.2 521 Q6P9N1-1 521 100% 0 0

Chromosomal Locations for CCDS 19113.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 23964784 23965358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23979488 23979647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23980487 23980574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23983150 23983266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23985745 23985840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23986138 23986253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23986734 23986814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23987885 23988064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23991736 23991837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 23999941 23999991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGTTCACCTCAGAGATAGGAGTTGTGGAAGAATGGCTGTCAGAATTTAAGACACTCCCAGAAACATCTT
TGCCAAATTATGCCACAAATTTGAAAGACAAGAGTTCTTTAGTTACATCTCTCTATAAAGTTATCCAGGA
GCCACAGAGTGAGTTACTAGAGCCCGTGTGTCACCAGCTCTTTGAGTTCTACCGCAGTGGGGAGGAGCAG
CTGCTGCGCTTCACTCTGCAGTTCCTCCCGGAGCTGATGTGGTGCTACCTCGCCGTGTCGGCCAGCAGAG
ATGTGCACAGCAGCGGCTGCATTGAGGCTCTCCTGCTGGGGGTTTACAACCTGGAAATAGTTGACAAACA
CGGACATAGTAAAGTATTGAGTTTTACAATTCCATCTTTATCCAAACCATCTGTATATCATGAACCTTCC
AGCATTGGGTCTATGGCGCTGACGGAGAGTGCGCTGTCCCAGCATGGCTTATCAAAAGTCGTGTACAGTG
GACCCCATCCTCAACGGGAGATGCTGACAGCACAGAACAGGTTTGAAGTATTGACATTCCTTCTGCTGTG
TTACAATGCTGCCTTAACCTACATGCCCAGTGTCTCTCTTCAGTCACTGTGTCAGATTTGTTCAAGAATA
TGTGTCTGTGGCTATCCCCGACAACATGTAAGAAAATACAGAGGTGTGAGCAGCAGGATACCGATTTCAT
CCGGCTTCATGGTGCAGATGCTAACAGGAGTGTATTTTGCCATATACAATGGAGAATGGGATCTAGCTCA
GAAAGCACTGGATGACATTATATACAGAGCCCAGCTAGAATTGTATCCAGAGCCTCTGCTGGTTGCTAAT
GCAATAAAGGCTTCATTGCCTCATGGTGCCATGAAATCTAGTAAGGAAGGTACAAGGTGTATTCAAGTGG
AGATCACACCAACCTCCTCTAGAATATCAAGAAATGCAGTTACCAGCATGTCAATACGAGGTCACAGGTG
GAAAAGACATGGAGATACAGAATTAACAGGTCAAGAAGAACTGATGGACATAACTGAAGTTGACGAGGGA
TTTTATTCCAGGGCTGCGTCTAGCACCAGCCAGTCGGGTCTATCAAACAGTAGTCACAATTGTAGTAACA
AGACAAGTGTAGGAAAGAACCAGAGACGGTCGGGAGGAAGCAAAGCTGGAGCGAAGGAGAGAGAAACTGC
AGGGGAGTCTTGCAGAGATCACTTTGCTCGCAAGCAAACCCAGAGAGCCCAGAGCGAGAACCTTGAGCTT
CTCTCTCTGAAGAGACTGACCTTAACCTCCAGCCAGTCCCTGCCCAAGCCCAGCAGCCAAGGCCTGGCTA
AGACTGCGGCCACTGTATTTAGTAAATCCTTTGAACAAGTCAGTGGTGCCCCAGTCCCACGTAGCCCTTC
TCCCGCCATTGGCTGTGTTGCTGGAGCAGATGCCAATAGATTTTCTGCCTGTAGTCTCCAAGAAGAAAAG
CTTATTTATGTGTCAGAAAGGACTGAACTTGCAGTGAAGTGTCAAGCCGGCCAGCAGGGACCTCCTAGTA
TTAGCGTCACTCTGTCTGCAGAGTAA

Translation (521 aa):
MFTSEIGVVEEWLSEFKTLPETSLPNYATNLKDKSSLVTSLYKVIQEPQSELLEPVCHQLFEFYRSGEEQ
LLRFTLQFLPELMWCYLAVSASRDVHSSGCIEALLLGVYNLEIVDKHGHSKVLSFTIPSLSKPSVYHEPS
SIGSMALTESALSQHGLSKVVYSGPHPQREMLTAQNRFEVLTFLLLCYNAALTYMPSVSLQSLCQICSRI
CVCGYPRQHVRKYRGVSSRIPISSGFMVQMLTGVYFAIYNGEWDLAQKALDDIIYRAQLELYPEPLLVAN
AIKASLPHGAMKSSKEGTRCIQVEITPTSSRISRNAVTSMSIRGHRWKRHGDTELTGQEELMDITEVDEG
FYSRAASSTSQSGLSNSSHNCSNKTSVGKNQRRSGGSKAGAKERETAGESCRDHFARKQTQRAQSENLEL
LSLKRLTLTSSQSLPKPSSQGLAKTAATVFSKSFEQVSGAPVPRSPSPAIGCVAGADANRFSACSLQEEK
LIYVSERTELAVKCQAGQQGPPSISVTLSAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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