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Report for CCDS19008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19008.1 Public Mus musculus 4 Ccdc27 23 108 98 CCDS HistoryNCBI Gene:381580Re-query CCDS DB by CCDS ID:19008.1Re-query CCDS DB by GeneID:381580See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047207.6 ENSMUSP00000039642.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047207.6Link to Ensembl Protein Viewer:ENSMUSP00000039642.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000047207Re-query CCDS DB by Protein ID:ENSMUSP00000039642
Original member Current member NCBI NM_001033455.2 NP_001028627.1 Accepted alive Link to Nucleotide Sequence:NM_001033455.2Link to Protein Sequence:NP_001028627.1Re-query CCDS DB by Nucleotide ID:NM_001033455Re-query CCDS DB by Protein ID:NP_001028627Link to BLAST:NP_001028627.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028627.1 639 Q3V036 639 100% 0 0

Chromosomal Locations for CCDS 19008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 154026734 154026856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154028020 154028124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154032797 154033009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154033272 154033349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154035750 154035880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154036068 154036491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154036767 154036859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154037667 154037846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154039502 154039656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154040968 154041069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154041715 154041841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 154042415 154042603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1920 nt):
ATGAAGCAGGAGAACTTGACTCAGGAATGCTGCTCCACATCCCCCAAGATCAGCAAGGGCCTGATGGTGC
TTCAGAGCATAGCCAGCCGGGGCTGCGACACACAGGACTCAGAGAAGAAACCGCAAAGTACCCAGCAAAG
CCTCAAAAAGTCAAGCCAGGCGGCTGCCGGATACTTCTATGACAAGGAGGACCAGATCAGGAAACTCAGC
AAACACAACGGCTTTTTGTCTGAAATGGAAGATATGAGAAAAGCCTTCCTCATGCGGCCTGGGTGTCCCC
AGTTTAGTACCAGGACAACATCCATGTCTCATGTGGGTTCTGCCATTATGGTTGATCTTCCAAGGACCTG
CTCTGGAGTTTGGAAGTTGACTGAGGACCATCCCCTAGGCAGGCTGGGCTCTGCCAGCAGTGTGGATGGG
AGGGTCTTTCCATTCAGCAAGAGTGCTTGTGAGCTCAACTACCCACGGAAGAGGAGTGAGCCTTCAGACC
CGAGTCCCACCGGCAGCCCCACTGTGGTCAAGAAGTCCCAGAGGACCAGAACGCCCTGGTATATCTCAGT
CATCCATGAGAAGGATCACTCTCTGCTCCTGATGGGAGAAGAGCTCCAGCGTTTCTCCGAGATGGAGAGC
CAGATGCAGAAGAAAGATCAGGAGATCCTGACACTCCAGAAGGAGAAGGAGGCCCTGAAGAAGCAGCTGA
AGAACCTGCTCAGAGGCAAAGGCACAGAAACCTCTTCAGCTTCCATCAAGATGGACCGGTCCTTTGAGAC
GCCCCTGAAGCTGGGGAGGATGAGTGTGCTGAAGACCATCTACAAAGAAGAGGATGAGCTACAGCACTGG
ATGCAGATGCAGGAGGAATATAGCATGGCGGAGAGTAGCAAGGAGCTGCACGTGGAACCAGGAAGCGCCA
TAGAGGAAAAGAGCTCTGAGGGGCCACCCGAGGAGGCTGCAGCTGCCAAACTGAGCAGGCCCAGCCAGAG
CAAGACTGAGACGCTGCTGGAGGTGGGCCCCGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGTGGAGGGT
GATGAAGCAAAAGGAACTGAGGAGGGAGAGATATTGGTGAATGAGGAAGAGGCATCGTGGGAGCTTCGGG
AGGACGAGGAATGTCACCCCAAGAGGTCCTACTCCATGACGGAGTCCTTTGAGGAGGAGCTGATGGCTCA
GCTGGAGGAGTATGAACGGATGTTGATGGACTTCCAGAGAGAGCTGGAATTCACTAGGTCCAGATATTCC
CTGGCCACAGGGACCATCACATCTTTGCAGCGGCAAACTGACTTCCAAGAGTCTCAGCTGCGGAAGGTCA
CCACGGAGAACGAGCTGCTGGAGAAGGAGCTCCGGGAACGGAAGCAGCAGATACAAGACATGACAGACAA
GTTCTCCAACCTCCGGGAGGAAAAGAAGCATCAGGAGATAATGGGACTCATTGAGAAGGAAAACCTGGTC
CTCCGACAGCAAGTTGCAGACTTGAAGATGGATCTCATCAGCAGTGAGCGGACTATTAAAGAGCTGAACA
CCCAAACCAAAGAGCTGGAAGATCAGGTTAACACCGACAAGGACCACCTGAGGCGGTGGAAGGATTTGCA
TGACGACCTACAGACACGTAACGAGATCATCCAACAGACAGAGCAACAGACTCGTGTGGTCCTGGAGGCC
ACCCAGGCCAGGTATGAGAAGCTAAGGAATAAGATCATCCAGGCTGTCTTCAGTGTCAGTGGGAACAAGA
ACTTGTCCATGGAACTCTCTGATAGCTACATCCTGGAATCCCTGCAGAGGATCATCTCGGAGAGGAGTGA
CTTCTACAGTCAGCTGAAGCAAAAGGGCGTGAAGGTGCCCCCACTACAGCAGTCAGATGTCTCCCTGCCT
AGCAAGATCAAGAAGATGGCATCCAAGTGA

Translation (639 aa):
MKQENLTQECCSTSPKISKGLMVLQSIASRGCDTQDSEKKPQSTQQSLKKSSQAAAGYFYDKEDQIRKLS
KHNGFLSEMEDMRKAFLMRPGCPQFSTRTTSMSHVGSAIMVDLPRTCSGVWKLTEDHPLGRLGSASSVDG
RVFPFSKSACELNYPRKRSEPSDPSPTGSPTVVKKSQRTRTPWYISVIHEKDHSLLLMGEELQRFSEMES
QMQKKDQEILTLQKEKEALKKQLKNLLRGKGTETSSASIKMDRSFETPLKLGRMSVLKTIYKEEDELQHW
MQMQEEYSMAESSKELHVEPGSAIEEKSSEGPPEEAAAAKLSRPSQSKTETLLEVGPEEEEEEEEEEVEG
DEAKGTEEGEILVNEEEASWELREDEECHPKRSYSMTESFEEELMAQLEEYERMLMDFQRELEFTRSRYS
LATGTITSLQRQTDFQESQLRKVTTENELLEKELRERKQQIQDMTDKFSNLREEKKHQEIMGLIEKENLV
LRQQVADLKMDLISSERTIKELNTQTKELEDQVNTDKDHLRRWKDLHDDLQTRNEIIQQTEQQTRVVLEA
TQARYEKLRNKIIQAVFSVSGNKNLSMELSDSYILESLQRIISERSDFYSQLKQKGVKVPPLQQSDVSLP
SKIKKMASK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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