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Report for CCDS18924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18924.1 Public Mus musculus 4 Plod1 23 108 98 CCDS HistoryNCBI Gene:18822Re-query CCDS DB by CCDS ID:18924.1Re-query CCDS DB by GeneID:18822See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18924.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000019199.13 ENSMUSP00000019199.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000019199.13Link to Ensembl Protein Viewer:ENSMUSP00000019199.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000019199Re-query CCDS DB by Protein ID:ENSMUSP00000019199
Original member Current member NCBI NM_011122.3 NP_035252.1 Accepted alive Link to Nucleotide Sequence:NM_011122.3Link to Protein Sequence:NP_035252.1Re-query CCDS DB by Nucleotide ID:NM_011122Re-query CCDS DB by Protein ID:NP_035252Link to BLAST:NP_035252.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035252.1 728 Q9R0E2 728 100% 0 0

Chromosomal Locations for CCDS 18924.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 147910719 147910874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147913220 147913345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147915797 147915943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147917305 147917409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147918134 147918199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147918780 147918893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147920169 147920310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147921007 147921132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147921398 147921502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147923124 147923245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147925517 147925648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147926147 147926248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147927023 147927120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147928458 147928521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147929540 147929652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147931122 147931285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147931627 147931763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147932731 147932822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 147936602 147936677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2187 nt):
ATGCGGTCCCTGCTGCTCCTGGCCCCGTTGGCCTGGCTTCTTCTGGTCCAGGCGAAGGATGACGCCAAGC
TAGAGGACAACCTTCTGGTCCTCACTGTGGCCACAAAAGAGACTGAGGGCTTCCGCCGCTTCAAGCGTTC
AGCTCAGTTCTTCAACTACAAGATCCAGTCACTGGGCCTGGGGGAGGACTGGAGTGTGGATGGAGGACCA
GCAGCAGCAGGTGGAGGACAGAAGGTTCGGCTGCTGAAGAAGGCACTGGAAAAGCACGCAGACAAGGAAG
ACCTGGTTATTCTCTTCGTTGACAGTTATGACGTGGTGTTTGCCTCGGGACCCCGGGAACTCTTAAAGAA
GTTCCAGCAGGCCAAGAGCCAGGTGGTCTTCTCCGCAGAGGAGCATATCTACCCGGACCGGAGGCTGGAG
GCCAAGTATCCCACAGTCCCCGACGGCAAGCGGTTCCTGGGCTCTGGAGGCTTCATTGGTTATGCCCCCA
GCCTCAGCAAACTGGTGGCCGAGTGGGAAGGCCAGGACAGTGACAGCGACCAGCTCTTTTATACCAAGAT
CTTCTTGAACCCGGAGAAGAGGGAGCAAATCAATATCAGCCTGGACCATCGCTGCCGAATCTTCCAGAAC
CTGGATGGAGCCTTGGATGAAGTTGTGCTCAAGTTTGAAATGGGCCACGTGAGAGCACGAAATCTGGCCT
ATGACACCCTCCCAGTGGTCGTTCATGGCAATGGGCCCACCAAGCTGCAGCTGAACTACCTGGGCAACTA
CATTCCTCGATTCTGGACCTTCGAGACGGGCTGCACCGTGTGTGACGAGGGCCTACGGAGCCTCAAGGGC
ATTGGGGATGAAGCTCTCCCCACTGTCCTGGTCGGTGTGTTCATTGAGCAGCCCACACCATTTCTATCCT
TGTTTTTCCTGCGGCTGCTGCGCCTACGATACCCTCAGAAACAGATGCGGCTCTTCATTCACAACCAGGA
ACGGCACCACAAACTTCAGGTAGAGCAGTTCCTGGCGGAGCACGGCAGTGAGTACCAGTCTGTGAAGCTA
GTGGGTCCTGAGGTGCGCATGGCCAACGCCGACGCCAGGAACATGGGCGCAGACCTGTGCCGTCAGGACC
AAACTTGCACCTACTACTTCAGTGTGGATGCTGATGTGGCTCTGACGGAGCCGAACAGCCTAAGGCTCCT
GATTGAACAAAACAAGAATGTCATTGCGCCACTCATGACCCGCCACGGGAGGCTCTGGTCCAACTTCTGG
GGGGGTCTGAGTGCAGATGGGTACTACGCCCGCTCAGAGGACTACGTGGACATTGTGCAGGGCCGTCGTG
TTGGCGTCTGGAACGTGCCTTACATCTCAAACATCTACCTGATCAAGGGCAGTGCCCTGCGGGCTGAACT
GCAGAACGTAGACCTTTTCCACTACAGCAAGCTGGATTCCGACATGAGTTTCTGCGCCAATGTCCGACAG
CAGGAGGTGTTCATGTTCCTGACCAACCGGCACACCTTTGGCCACCTGCTTTCCCTGGATAACTACCAGA
CCACCCACCTACATAATGATCTCTGGGAGGTGTTCAGCAACCCTGAGGACTGGAAAGAAAAGTACATCCA
TGAGAATTACACCAAGGCCCTGGCGGGGAAGCTGGTGGAGACGCCTTGTCCGGATGTCTACTGGTTCCCC
ATCTTCACGGAGGCGGCCTGTGATGAGCTGGTGGAGGAGATGGAACACTATGGCCAGTGGTCTCTGGGTG
ATAATAAGGACAACCGGATCCAGGGTGGCTACGAAAACGTGCCCACTATCGACATCCATATGAACCAGAT
CACCTTCGAGCGGGAGTGGCACAAGTTCCTGGTGGAGTACATCGCCCCCATGACAGAGAAGCTGTACCCT
GGCTACTACACTAGGGCCCAGTTTGATCTAGCCTTCGTCGTCCGCTATAAGCCCGATGAGCAGCCTTCCT
TGATGCCCCACCATGACGCCTCTACCTTCACCGTCAACATAGCCCTGAACAGGGTTGGGGAAGATTATGA
GGGCGGAGGTTGCCGATTTCTGCGCTACAACTGCTCCGTGAGGGCACCAAGGAAGGGCTGGGCCCTCCTG
CACCCCGGGCGGCTCACACACTATCACGAGGGGCTTCCTACTACCAAGGGCACGCGCTACATTGCTGTGT
CTTTCGTCGATCCCTAA

Translation (728 aa):
MRSLLLLAPLAWLLLVQAKDDAKLEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQSLGLGEDWSVDGGP
AAAGGGQKVRLLKKALEKHADKEDLVILFVDSYDVVFASGPRELLKKFQQAKSQVVFSAEEHIYPDRRLE
AKYPTVPDGKRFLGSGGFIGYAPSLSKLVAEWEGQDSDSDQLFYTKIFLNPEKREQINISLDHRCRIFQN
LDGALDEVVLKFEMGHVRARNLAYDTLPVVVHGNGPTKLQLNYLGNYIPRFWTFETGCTVCDEGLRSLKG
IGDEALPTVLVGVFIEQPTPFLSLFFLRLLRLRYPQKQMRLFIHNQERHHKLQVEQFLAEHGSEYQSVKL
VGPEVRMANADARNMGADLCRQDQTCTYYFSVDADVALTEPNSLRLLIEQNKNVIAPLMTRHGRLWSNFW
GGLSADGYYARSEDYVDIVQGRRVGVWNVPYISNIYLIKGSALRAELQNVDLFHYSKLDSDMSFCANVRQ
QEVFMFLTNRHTFGHLLSLDNYQTTHLHNDLWEVFSNPEDWKEKYIHENYTKALAGKLVETPCPDVYWFP
IFTEAACDELVEEMEHYGQWSLGDNKDNRIQGGYENVPTIDIHMNQITFEREWHKFLVEYIAPMTEKLYP
GYYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTVNIALNRVGEDYEGGGCRFLRYNCSVRAPRKGWALL
HPGRLTHYHEGLPTTKGTRYIAVSFVDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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