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Report for CCDS18885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18885.1 Public Mus musculus 4 Efhd2 23 108 98 CCDS HistoryNCBI Gene:27984Re-query CCDS DB by CCDS ID:18885.1Re-query CCDS DB by GeneID:27984See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18885.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036854.3 ENSMUSP00000044502.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036854.3Link to Ensembl Protein Viewer:ENSMUSP00000044502.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000036854Re-query CCDS DB by Protein ID:ENSMUSP00000044502
Original member Current member NCBI NM_025994.3 NP_080270.2 Accepted alive Link to Nucleotide Sequence:NM_025994.3Link to Protein Sequence:NP_080270.2Re-query CCDS DB by Nucleotide ID:NM_025994Re-query CCDS DB by Protein ID:NP_080270Link to BLAST:NP_080270.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080270.2 240 Q9D8Y0 240 99.5833% 0 1

Chromosomal Locations for CCDS 18885.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 141859747 141859878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141860548 141860682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141861805 141861952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141874560 141874867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (723 nt):
ATGGCCACGGACGAGTTGGCCAGCAAGCTGAGCCGGAGGCTGCAGATGGAGGGCGAAGGCGGCGAGGCGA
CGGAGCAGCCGGGGCTCAACGGGGCGGCGGCGGCGGCGGCGGCCGAGGCTCCCGACGAGACTGCCCAGGC
GTTGGGCAGCGCGGACGACGAGCTGAGCGCCAAGCTGCTGCGGCGCGCGGACCTCAACCAGGGCATCGGC
GAGCCACAGTCGCCCAGCCGCCGCGTCTTCAACCCCTACACCGAGTTCAAGGAGTTCTCCAGGAAGCAGA
TCAAAGACATGGAGAAGATGTTCAAGCAGTATGATGCCGGCAGGGATGGCTTCATCGACCTGATGGAGCT
GAAACTCATGATGGAGAAGCTGGGGGCCCCCCAGACACACTTGGGCCTCAAGAGTATGATCCAGGAGGTG
GACGAGGATTTCGACAGCAAACTCAGCTTCCGGGAGTTCCTTCTGATCTTCCGCAAGGCAGCAGCAGGGG
AGTTGCAGGAAGACAGCGGCTTGCACGTCCTGGCCCGCCTGTCCGAGATCGATGTCTCCACAGAGGGCGT
TAAGGGTGCCAAGAACTTCTTCGAGGCCAAGGTACAGGCCATCAACGTGTCCAGCCGCTTTGAGGAAGAG
ATCAAAGCTGAGCAAGAGGAAAGGAAGAAGCAGGCTGAGGAGGTGAAGCAGCGGAAAGCGGCCTTTAAGG
AGCTGCAGTCCACGTTCAAGTAG

Translation (240 aa):
MATDELASKLSRRLQMEGEGGEATEQPGLNGAAAAAAAEAPDETAQALGSADDELSAKLLRRADLNQGIG
EPQSPSRRVFNPYTEFKEFSRKQIKDMEKMFKQYDAGRDGFIDLMELKLMMEKLGAPQTHLGLKSMIQEV
DEDFDSKLSFREFLLIFRKAAAGELQEDSGLHVLARLSEIDVSTEGVKGAKNFFEAKVQAINVSSRFEEE
IKAEQEERKKQAEEVKQRKAAFKELQSTFK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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