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Report for CCDS18859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18859.1 Public Mus musculus 4 Atp13a2 23 108 98 CCDS HistoryNCBI Gene:74772Re-query CCDS DB by CCDS ID:18859.1Re-query CCDS DB by GeneID:74772See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18859.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037055.13 ENSMUSP00000039648.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037055.13Link to Ensembl Protein Viewer:ENSMUSP00000039648.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037055Re-query CCDS DB by Protein ID:ENSMUSP00000039648
Original member NCBI NM_029097.2 NP_083373.2 Updated not alive Link to Nucleotide Sequence:NM_029097.2Link to Protein Sequence:NP_083373.2Re-query CCDS DB by Nucleotide ID:NM_029097Re-query CCDS DB by Protein ID:NP_083373
Current member NCBI NM_029097.3 NP_083373.2 Accepted alive Link to Nucleotide Sequence:NM_029097.3Link to Protein Sequence:NP_083373.2Re-query CCDS DB by Nucleotide ID:NM_029097Re-query CCDS DB by Protein ID:NP_083373Link to BLAST:NP_083373.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083373.2 1169 Q9CTG6 1169 100% 0 0

Chromosomal Locations for CCDS 18859.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140987067 140987076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140992132 140992226 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140992338 140992520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140993796 140993854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140993948 140994062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140994312 140994391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140995326 140995403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140995558 140995627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140996302 140996436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140996524 140996590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140996668 140996799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140999128 140999283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141000343 141000453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141000543 141000589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141000685 141000873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141001884 141002090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141002457 141002546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141002624 141002783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141002899 141003019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141003151 141003275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141003886 141004046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141004182 141004286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141004368 141004447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141005002 141005154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141005266 141005362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141006043 141006266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141006352 141006503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141006679 141006848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 141006941 141007078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3510 nt):
ATGAGCGCAGACAGCAGCCTGCTCATGGGCAGCACGCCCCCCAGCTATGGGACCCTGACGACAGGGACGT
CAATCGATCCCCTCAGCTCCTCAGCTTCATCCGTGAGGCTCAGCGGCTACTGTGGCAGTCCATGGAGGGC
CATCGGCTATCACGCCGCGGTCTGGATGCTGGCCGGGATCCCTTGGCTGCTATTCCGCTGGAAGCCCTTG
TGGGGCGTGCGCCTGCGCCTGAAGCCATGCAGCCTGGCCCACGCCGAAACACTCGTTATAGAAATAAAAG
ACAAAGAGGGTAGCTCCAGACAGCTCTTCACGGTTCAGGTGCAGACTGAGGCTGTTGTTCAGGGCAGCCT
GGAGCTGCCCCCACAGGCCCAGGCAGAGGATGGCCGGAGCCAGGCAGCCGTGGGAGTGACACCAGAGGGC
ACATGGCAGGACACCTCCGAACTCCACAGGCAGGAAGAGGCAAAGCAGGTACTGCGCTATTATGTCCTCC
AAGGTCAACGCTACGTCTGGATGGAAACCCAGCAAGCCTTCTGCCAAGTCAGCCTGCTGGACCACGGTCG
TACCTGTGATGACGTCCACTGCTCCAGCTCCGGCCTCAGCCTCCAGGACCAAGCTACGAGGAAGACCATT
TACGGCCCCAACGTGATCAGTATTCCTGTCAAGTCCTACCTGCAGCTGCTGGCGGATGAGGCCCTGAATC
CCTACTATGGGTTCCAAGCCTTCAGCATCGCACTGTGGCTGGCCGACCACTACTACTGGTATGCTCTCTG
CATCTTCCTCATCTCAGCCATCTCCATCTGCCTGGCTCTGTACAAGACCAGAAAGCAAAGCTTGACCTTG
AGGGACATGGTCAAGCTGTCCGTGCGGGTGCAGGTGTGCCGACCCGGAGGAGAGGAAGAGTGGGTGGACT
CCAGTGAGCTGGTGCCCGGAGACTGCTTGGTGCTGCCCCAGGAGGGCGGGGTGATGCCATGCGACGCGGC
TCTGGTGGCCGGGGAGTGTGTGGTCAACGAGAGCTCCCTGACAGGGGAGAGCACCCCTGTGCTGAAGACG
GCCCTGCCAGAGGGGCCCAAGCCCTACTGCCCAGAGACCCACCGGCGGCACACCCTCTTCTGTGGCACCC
TCATTCTGCAGGCCCGAGCCTACGTGGGACCCCGTGTGCTAGCAGTGGTGACTCGGACAGGGTTCTGCAC
AGCCAAAGGGGGCCTGGTGAGCTCCATCCTGCACCCAAGGCCCATCAGCTTCAAGTTCTACAAACACAGC
ATGAAGTTTGTGGCTGCGCTCTCCGTCCTGGCTCTGCTAGGCACCGTCTACAGCATCATCATCCTCTACC
GCAACCGGGTACCTGTGAGGGAGATTGTGATCCGAGCTCTGGACCTGGTGACGGTGGTGGTGCCGCCCGC
CCTGCCTGCCGCCATGACCGTGTGCACACTCTATGCCCAGAGTCGGCTGCGCACACAGGGCATCTTCTGC
ATCCACCCACTGCGCATCAACTTGGGGGGCAAGCTGCGGCTCGTGTGCTTTGACAAGACAGGCACCCTCA
CGGAGGACGGCTTGGACGTAATGGGCGTGGTGCCCCTAAAGGGGCAGGTGTTGCTGCCACTGGTCCCAGA
GCCCTGCCACCTGCCCCTGGGGCCCCTCCTGCGAGCACTGGCCACCTGTCATGCCCTCAGCCAGCTACAT
GACACCCCGGTGGGCGACCCCATGGATCTGAAGATGGTGGAGTCTACAGGCTGGGTCTTAGAGGAGGGTC
CAGCTGCAGGCTCAGCACCTGGGAGCCAGGTCTTGGTGGTAATGAGACCCCCACCCGGGGGCCCTCGGCA
GCAGGAAGAGCCACCAGTGCCAGTCAGCGTCCTCTGCCGCTTCCCCTTCTCCTCTGCCCTGCAGCGGATG
GATGTGGTAGTGACATGGCCAGGGGCCACCCAGCCTGAGGCCTACGTCAAAGGCTCCCCAGAGCTTGTGG
CCAGCCTCTGCAGCCCCGAGACAGTACCCAGCGACTTTTCTCAGGTGCTGCAGAGCTACACAGCTGCTGG
CTACCGAGTTGTGGCCCTGGCTGGCAAGCCACTGCCCATTGCGCCCAGCCTTGCGGCCGCTCAGCAGCTA
ACAAGGGATACTGTGGAGCGGGAACTGAGCCTCCTGGGGCTGCTGGTCATGCGGAACCTACTGAAGCCAC
AGACGGCCCCAGTTATCCAGACTCTGAGGAAGACGGGCATCCGCACCGTTATGGTGACAGGGGACAACCT
GCAGACAGCAGTCACCGTGGCCAGAGCTTGTGGCATGGTGGGCGCCCAGGAGCACCTGGCTGTCATCCAT
GCCACCCACCCCGAGCAGGGCCAGCCTGCTGCCCTCGAGTTCCTGCCAACGGAGTCCTCTGCAGTCATGA
ACGGGGCGAAGGCCACAGGCTATCCCACGGTGCCGGAACCCCAGTCCTGTCACCTGGCCCTCAGCGGGTC
CACGTTTGCAGTCCTTCGGAAGCACTTCCCCAAGCTGCTGCCCAAGGTCCTGGTGCAGGCTACCGTCTTT
GCCCGAATGGCCCCGGAGCAGAAGACAGAGCTAGTGTGCGAACTGCAGAGGCTTCAGTACTGTGTGGGCA
TGTGCGGGGATGGAGCCAACGACTGTGGGGCCCTGAAGGCGGCTGATGTGGGCATATCGCTGTCCCAGGC
GGAGGCGTCAGTGGTCTCTCCGTTCACCTCCAGCATGGCCAGTATTGAATGTGTGCCCACTGTCATCAGG
GAAGGCCGCTGCTCCCTGGATACTTCATTCAGCGTCTTCAAGTACATGGCCCTCTACAGCCTGACTCAGT
TCATCTCTGTGCTCATTCTCTACACAATCAACACCAACCTGGGAGACCTACAGTTCTTGGCCATTGACCT
GGTCATCACCACCACGGTTGCGGTGCTCATGAGCCGCACAGGCCCTGCACTGACCTTGGTGCGAGCGCGG
CCGCCAGGGGCGCTGCTGAGTGTGCCTGTGCTTGGCAGTCTGCTGCTGCAGGTGGCCTTGGTGGCCGGCA
TCCAGCTGGGGGGCTACTTTTTGGTCATAGCTCAGCCCTGGTTTGTGCCTCTGAACAGAACTGTGCCCGC
TCCGGACAACCTGCCCAACTACGAGAATACGGTGGTCTTCTCTCTGTCTGGCTTCCAGTACCTCATCCTG
GCCGCAGCGGTGTCTAAGGGGGCACCCTTCCGCCAGCCACTCTACACCAACGTGCCCTTCCTGGTGGCCC
TGGCGCTCTTGGGCTCTGTCCTGGTGGGCCTCATCCTGGTCCCCGGCCTCCTGCAGGGGCCCCTAGGACT
GAGGAACATTGTGGACAGCTCCTTCAAGCTACTGCTGCTGGGTCTGGTCGCCTTCAACTTCGTCGGCGCC
TTTATGCTGGAGAGCGTGCTGGACCAGTGTCTCCCAGCCTGCCTGCGGTGGCTGCGGCCTAAACGGGCCT
CCAAGAAGCAATTCAAGCGGCTGCAACAGGAGCTTGCAGAACATCCATGGCCCACTCTGCCCGTTGGCTC
CGTGAGGTAG

Translation (1169 aa):
MSADSSLLMGSTPPSYGTLTTGTSIDPLSSSASSVRLSGYCGSPWRAIGYHAAVWMLAGIPWLLFRWKPL
WGVRLRLKPCSLAHAETLVIEIKDKEGSSRQLFTVQVQTEAVVQGSLELPPQAQAEDGRSQAAVGVTPEG
TWQDTSELHRQEEAKQVLRYYVLQGQRYVWMETQQAFCQVSLLDHGRTCDDVHCSSSGLSLQDQATRKTI
YGPNVISIPVKSYLQLLADEALNPYYGFQAFSIALWLADHYYWYALCIFLISAISICLALYKTRKQSLTL
RDMVKLSVRVQVCRPGGEEEWVDSSELVPGDCLVLPQEGGVMPCDAALVAGECVVNESSLTGESTPVLKT
ALPEGPKPYCPETHRRHTLFCGTLILQARAYVGPRVLAVVTRTGFCTAKGGLVSSILHPRPISFKFYKHS
MKFVAALSVLALLGTVYSIIILYRNRVPVREIVIRALDLVTVVVPPALPAAMTVCTLYAQSRLRTQGIFC
IHPLRINLGGKLRLVCFDKTGTLTEDGLDVMGVVPLKGQVLLPLVPEPCHLPLGPLLRALATCHALSQLH
DTPVGDPMDLKMVESTGWVLEEGPAAGSAPGSQVLVVMRPPPGGPRQQEEPPVPVSVLCRFPFSSALQRM
DVVVTWPGATQPEAYVKGSPELVASLCSPETVPSDFSQVLQSYTAAGYRVVALAGKPLPIAPSLAAAQQL
TRDTVERELSLLGLLVMRNLLKPQTAPVIQTLRKTGIRTVMVTGDNLQTAVTVARACGMVGAQEHLAVIH
ATHPEQGQPAALEFLPTESSAVMNGAKATGYPTVPEPQSCHLALSGSTFAVLRKHFPKLLPKVLVQATVF
ARMAPEQKTELVCELQRLQYCVGMCGDGANDCGALKAADVGISLSQAEASVVSPFTSSMASIECVPTVIR
EGRCSLDTSFSVFKYMALYSLTQFISVLILYTINTNLGDLQFLAIDLVITTTVAVLMSRTGPALTLVRAR
PPGALLSVPVLGSLLLQVALVAGIQLGGYFLVIAQPWFVPLNRTVPAPDNLPNYENTVVFSLSGFQYLIL
AAAVSKGAPFRQPLYTNVPFLVALALLGSVLVGLILVPGLLQGPLGLRNIVDSSFKLLLLGLVAFNFVGA
FMLESVLDQCLPACLRWLRPKRASKKQFKRLQQELAEHPWPTLPVGSVR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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