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Report for CCDS18852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18852.1 Public Mus musculus 4 Rcc2 23 108 98 CCDS HistoryNCBI Gene:108911Re-query CCDS DB by CCDS ID:18852.1Re-query CCDS DB by GeneID:108911See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038893.5 ENSMUSP00000038144.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038893.5Link to Ensembl Protein Viewer:ENSMUSP00000038144.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000038893Re-query CCDS DB by Protein ID:ENSMUSP00000038144
Original member Current member EBI ENSMUST00000071169.8 ENSMUSP00000071163.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071169.8Link to Ensembl Protein Viewer:ENSMUSP00000071163.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000071169Re-query CCDS DB by Protein ID:ENSMUSP00000071163
Original member Current member NCBI NM_173867.5 NP_776292.1 Accepted alive Link to Nucleotide Sequence:NM_173867.5Link to Protein Sequence:NP_776292.1Re-query CCDS DB by Nucleotide ID:NM_173867Re-query CCDS DB by Protein ID:NP_776292Link to BLAST:NP_776292.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_776292.1 520 Q8BK67 520 100% 0 0

Chromosomal Locations for CCDS 18852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140702157 140702435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140707951 140708044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140710333 140710476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140712131 140712262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140712586 140712674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140713399 140713513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140715866 140716032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140717020 140717200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140717625 140717730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140718340 140718412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140720545 140720622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140721100 140721204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGCCCAGGAAGAAGGGGGCGGCCTGGGAGGAGCCGAGTTCGGGCAACGGCACGGCGCGCGCGGGGCCCC
GGCGACGCGGCGGCCCCGCGGGCAGGAAGCGCGAGCGGCCCGAGCGCTGCAGCAGCAGCAGCGGCGGCGG
CAGCAGCGGCGACGAGGACGGCCCGGAGCTGGACGGGGCCCCCGGCGGCGGCAAGCGCACAGCCAGGCCG
GCGACGGCGGGCAAGGCGGCCGGCGCGGCCGCGATCATCACGGAGCCCGAGCACACGAAGGAGCGCGTCA
AACTTGAAGGGTCTAAGTGCAAAGGGCAGCTTTTGATTTTTGGGGCAACCAACTGGGACTTGATTGGACG
GAAGGAAGTGCCTAAACAGCAAGCTGCGTACCGCAACCTTGGTCAGAATTTGTGGGGGCCCCATAGGTAT
GGGTGCCTGTCAGGAGTCCGGGTGCGAACCGTGGTTTCAGGCTCATGTGCTGCCCACAGCCTCCTCATCA
CCACAGAAGGGAAGCTGTGGAGCTGGGGTCGGAATGAGAAGGGGCAGCTGGGCCATGGTGATACCAAGAG
GGTGGAAGCCCCCAGACTCATCGAGGCCCTCAGCCATGAGGCAATCGTGCTGGCAGCCTGTGGGCGCAAC
CACACCCTGGCCTTGACAGATACTGGATCAGTGTTTGCCTTCGGAGAGAATAAAATGGGGCAGCTGGGTC
TCGGGAACCAGACAGATGCCGTCCCAAGTCCTGCTCAGATAATGTACAACGGGCAGCCAATCACCAAGAT
GGCCTGCGGGGCCGAGTTCAGCATGCTGATGGACTGTAAAGGAAACCTCTACTCCTTTGGGTGCCCTGAG
TATGGCCAGCTGGGGCACAACTCAGATGGCAAGTTCATCGCCCGGGCGCAGAGGATAGAATATGATTGTG
AGCTGGTGCCCCGCAGAGTGGCCATCTTCATCGAGAAGACCAAGGACGGGCAGATCTTACCTGTCCCCAA
CGTGGTGGTTCGAGATGTAGCCTGTGGCGCTAACCACACACTGGTCCTGGACTCTCAGAAGCGAGTGTTC
TCCTGGGGCTTTGGTGGCTATGGCCGGCTGGGCCATGCCGAGCAGAAGGATGAGATGGTGCCTCGCCTGG
TGAAGCTGTTCGACTTCCCGGGGCGTGGTGCAACCCAGATCTATGCCGGCTACACCTGCTCCTTCGCTGT
CAGTGAAGTGGGTGGCCTGTTTTTCTGGGGGGCCACCAATACCTCCCGAGAGTCTACCATGTACCCGAAG
GCAGTGCAGGACCTCTGCGGCTGGCGGATCCGGAGCCTTGCCTGCGGGAAGAGCAGCATCATCGTAGCTG
CGGACGAGAGTACTATCAGTTGGGGTCCATCGCCAACCTTCGGGGAATTGGGGTATGGGGACCACAAGCC
CAAGTCTTCTACTGCGGCCCAGGAGGTGAAGACTCTGGATGGCATCTTCTCCGAACAGGTGGCCATGGGC
TATTCACACTCCTTGGTGATAGCGCGAGACGAGAGCGAGGCTGAGAAGGAGAAGCTGCAGAGGCTACCTG
AGTACACCCCGCGCACCCTCTGA

Translation (520 aa):
MPRKKGAAWEEPSSGNGTARAGPRRRGGPAGRKRERPERCSSSSGGGSSGDEDGPELDGAPGGGKRTARP
ATAGKAAGAAAIITEPEHTKERVKLEGSKCKGQLLIFGATNWDLIGRKEVPKQQAAYRNLGQNLWGPHRY
GCLSGVRVRTVVSGSCAAHSLLITTEGKLWSWGRNEKGQLGHGDTKRVEAPRLIEALSHEAIVLAACGRN
HTLALTDTGSVFAFGENKMGQLGLGNQTDAVPSPAQIMYNGQPITKMACGAEFSMLMDCKGNLYSFGCPE
YGQLGHNSDGKFIARAQRIEYDCELVPRRVAIFIEKTKDGQILPVPNVVVRDVACGANHTLVLDSQKRVF
SWGFGGYGRLGHAEQKDEMVPRLVKLFDFPGRGATQIYAGYTCSFAVSEVGGLFFWGATNTSRESTMYPK
AVQDLCGWRIRSLACGKSSIIVAADESTISWGPSPTFGELGYGDHKPKSSTAAQEVKTLDGIFSEQVAMG
YSHSLVIARDESEAEKEKLQRLPEYTPRTL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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