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Report for CCDS1882.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1882.1 Public Homo sapiens 2 ETAA1 24 110 108 CCDS HistoryNCBI Gene:54465Re-query CCDS DB by CCDS ID:1882.1Re-query CCDS DB by GeneID:54465See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1882.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272342.6 ENSP00000272342.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272342.6Link to Ensembl Protein Viewer:ENSP00000272342.5Re-query CCDS DB by Nucleotide ID:ENST00000272342Re-query CCDS DB by Protein ID:ENSP00000272342
Original member Current member NCBI NM_019002.4 NP_061875.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019002.4Link to Protein Sequence:NP_061875.2Re-query CCDS DB by Nucleotide ID:NM_019002Re-query CCDS DB by Protein ID:NP_061875Link to BLAST:NP_061875.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061875.2 926 Q9NY74 926 100% 0 0

Chromosomal Locations for CCDS 1882.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 67397449 67397671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 67399169 67399297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 67399550 67399626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 67402862 67402974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 67403225 67405335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 67409911 67410038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGAGTCGGCGAAGGAAACATGATGACAGCCCTAGCCCGAAGAAAACGCCGCACAAAACAGTGGCGGCGG
AG
GAATGCGGCTCGGTGGTCGAGCCAGGGAGGAGGCGGCTGAGATCGGCCCGCGGTTCGTGGCCCTGCGG
G
GCTAGAGAGGGGCCTCCCGGGCCAGTGCGGCAGCGAGAGCAGCCTCCGACCGCCGCCCTGTGCAGTAAA
AGT
AACCCCGAGGAAAGGTATGAAACACCAAAGAGAGCGCTGAAAATGGACTCACTGTCATCTTCCTTCA
GT
TCTCCTAATGATCCAGATGGACAGAATGATATCTTTTGGGATCAGAATTCTCCATTGACAAAGCAGTT
A
GGTAAAGGAAGAAAAAAACAGATTTACACCACAGATAGTGATGAGATTTCACATATTGTTAATCGTATT
GCT
CCTCAGGATGAAAAACCAACAACAAATTCTATGCTGGACATGTGGATTGGTGAAACTGCTATTCCTT
GT
ACTCCCAGTGTAGCAAAAGGAAAATCAAGAGCAAAAATCAGCTGCACAAAGTTAAAAACACAAAGTCA
A
GAAGAAGAACTTATGAAACTGGCTAAACAATTTGATAAAAATATGGAAGAGCTAGATGTGATTCAAGAG
CAA
AACAAGAGGAATTATGATTTTACCCAGATGATTTCAGAAACAGAGATTTTAAGTAATTATAAAGATA
AT
ATACAGATGTGGTCATTACATAATATAGTTCCCGAAATAGATAATGCTACAAAAAAGCCAATCAAAGG
A
AACACCAAGATATCTGTGGCAAATAATCAAAATAGCAGTCAGAAGCCATTTGACCAAATTGCTGAAGCA
GCC
TTTAATGCTATTTTTGATGGTTCTACTCAGAAATGTAGCGGACAGTTAAGCCAAGAACTGCCAGAGG
CT
TTTTGGAGCACCAGTAATACTACCTTTGTAAAGACAAATGCTTTGAAAGAGGAGAAAATCATTACTAA
T
GAAACTCTGGTCATTGAAAAACTGTCAAATAAAACCCCACGATCACTTTCTTCTCAAGTAGATACACCC
ATA
ATGACAAAATCATGTGTGACTTCCTGTACTAAGGAGCCAGAAACTTCTAATAAGTACATTGATGCAT
TT
ACTACAAGTGATTTTGAGGATGATTGGGAAAACTTACTAGGTAGTGAACCTTTTGCTATGCAAAATAT
C
GACATGCCTGAACTCTTTCCTTCTAAAACAGCCCATGTTACTGATCAAAAGGAAATTTGTACCTTTAAT
AGT
AAAACTGTTAAAAATACGTCAAGAGCAAATACAAGTCCAGATGCCAGGTTAGGAGATTCAAAAGTAT
TA
CAAGATCTTTCTTCAAAGACATATGACAGAGAATTAATAGATGCAGAATATAGATTTTCACCAAATTC
A
AATAAATCAAACAAATTATCCACTGGAAATAAAATGAAATTTGAGAACTCTTCCAATAAAATTGTTATT
CAA
GACGAAATTCAAAATTGTATAGTTACATCTAATCTGACAAAAATAAAGGAAGATATTCTTACTAACT
CT
ACTGAAGCTTCTGAAAGGAAGTCAGCTTTGAACACAAGGTATTCTAATGAACAGAAAAATAAGTGCAT
T
TTAAATCAGTCTATTAAAGCCCCTGTTAATACTGATCTTTTTGGCTCTGCAAATCTAGGCAGTAAAACC
AGT
GTTAGTAACCCAAATCAGACTAGTGCATCAAAAGTAGGTTCTTTCTTTGATGATTGGAATGATCCCT
CA
TTTGCCAATGAAATTATTAAAGCATGTCATCAATTAGATAATACCTGGGAAGCAGATGATGTAGATGA
T
GATTTGTTGTACCAAGCATGTGATGATATTGAAAGACTAACTCAGCAACAAGACATTAGAAAGGACAGT
AAG
ACATCAGAAAGTATATGTGAGATCAATAATAATTCCGAACATGGAGCCAAACTAACTCAGCAACAAG
AC
ATTAGAAAGGACAGTAAGACATCAGAAAGTATATGTGAGATCAATAATAATTCCGAACATGGAGCCAA
A
AACATGTTTGCTATATCTAAACAAGGAAGTAATTTGGTACAATCAAAGCATTTGAATCCAGGCAGCATT
TCA
GTGCAGACATCTTTGACAAATAGCTCACAAATAGATAAGCCAATGAAGATGGAGAAAGGGGAAATGT
AT
GGAAATTCTCCAAGATTTTTAGGTGCCACAAATTTGACTATGTATTCTAAGATCTCAAACTGTCAGAT
A
AATAATCTGCATGTGTCTTATACTAACACTGATGTTCCAATACAAGTGAATAGTTCCAAATTGGTTCTT
CCA
GGAAGTTCAAGTTTGAATGTAACTTCAGATCATATGAATACAGAAATTACTACTTATAAGAAGAAAT
TG
AGTACTAATCAGCCATGCCATAAGACTGTAACAGATGAAGCTCAGAGCAACCTTAACACAACAGTTGG
A
TTTTCAAAGTTTACATTTACAAGGATGAAAAATTCTCAGATTCTTTCTCAGTTTAATCAAAATTGTATA
ACT
GGAAGTATGTCTGATACCAAAATTACACAGGGTGTGGAGAAAAAGAAAGGTGTCAACCCATTACTGG
AG
GAAGCTGTTGGACAGCAATCTTTGGTGAAACTTTCTGAATCTTTGAAACAATCTTCAAAAGAGGAAGA
A
GAGAAAAATAGAAAGTGTTCTCCTGAAGAAATTCAGAGAAAAAGACAAGAAGCACTGGTTCGGAGAATG
GCT
AAAGCACGAGCCTCATCTGTAAATGCAGCTCCCACTTCATTTCTTTAA


Translation (926 aa):
MSRRRKHDDSPSPKKTPHKTVAAEECGSVVEPGRRRLRSARGSWPCGAREGPPGPVRQREQPPTAALCSK
S
NPE
ERYETPKRALKMDSLSSSFSSPNDPDGQNDIFWDQNSPLTKQLGKGRKKQIYTTDSDEISHIVNRI
A
PQ
DEKPTTNSMLDMWIGETAIPCTPSVAKGKSRAKISCTKLKTQSQEEELMKLAKQFDKNMEELDVIQE
Q
NKRNYDFTQMISETEILSNYKDNIQMWSLHNIVPEIDNATKKPIKGNTKISVANNQNSSQKPFDQIAEA
A
FNAIFDGSTQKCSGQLSQELPEAFWSTSNTTFVKTNALKEEKIITNETLVIEKLSNKTPRSLSSQVDTP
I
MTKSCVTSCTKEPETSNKYIDAFTTSDFEDDWENLLGSEPFAMQNIDMPELFPSKTAHVTDQKEICTFN
S
KTVKNTSRANTSPDARLGDSKVLQDLSSKTYDRELIDAEYRFSPNSNKSNKLSTGNKMKFENSSNKIVI
Q
DEIQNCIVTSNLTKIKEDILTNSTEASERKSALNTRYSNEQKNKCILNQSIKAPVNTDLFGSANLGSKT
S
VSNPNQTSASKVGSFFDDWNDPSFANEIIKACHQLDNTWEADDVDDDLLYQACDDIERLTQQQDIRKDS
K
TSESICEINNNSEHGAKLTQQQDIRKDSKTSESICEINNNSEHGAKNMFAISKQGSNLVQSKHLNPGSI
S
VQTSLTNSSQIDKPMKMEKGEMYGNSPRFLGATNLTMYSKISNCQINNLHVSYTNTDVPIQVNSSKLVL
P
GSSSLNVTSDHMNTEITTYKKKLSTNQPCHKTVTDEAQSNLNTTVGFSKFTFTRMKNSQILSQFNQNCI
T
GSMSDTKITQGVEKKKGVNPLLEEAVGQQSLVKLSESLKQSSK
EEEEKNRKCSPEEIQRKRQEALVRRM
A
KARASSVNAAPTSFL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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