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Report for CCDS18788.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18788.1 Public Mus musculus 4 Ifnlr1 23 108 98 CCDS HistoryNCBI Gene:242700Re-query CCDS DB by CCDS ID:18788.1Re-query CCDS DB by GeneID:242700See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18788.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074408.6 ENSMUSP00000074009.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074408.6Link to Ensembl Protein Viewer:ENSMUSP00000074009.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000074408Re-query CCDS DB by Protein ID:ENSMUSP00000074009
Original member NCBI NM_174851.3 NP_777276.3 Updated not alive Link to Nucleotide Sequence:NM_174851.3Link to Protein Sequence:NP_777276.3Re-query CCDS DB by Nucleotide ID:NM_174851Re-query CCDS DB by Protein ID:NP_777276
Current member NCBI NM_174851.4 NP_777276.3 Accepted alive Link to Nucleotide Sequence:NM_174851.4Link to Protein Sequence:NP_777276.3Re-query CCDS DB by Nucleotide ID:NM_174851Re-query CCDS DB by Protein ID:NP_777276Link to BLAST:NP_777276.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_777276.3 535 Q8CGK5 535 100% 0 0

Chromosomal Locations for CCDS 18788.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135686542 135686599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135690522 135690645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135698790 135698971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135701228 135701370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135703710 135703869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135704169 135704299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135705053 135705862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGTGGCGGGCCGACCGGTGGGCGCCCCTACTCCTGTTCCTGTTGCAGAGCGCCCTAGGAAGGCCCCGTC
TA
GCCCCACCCAGAAACGTGACACTCTTCTCCCAGAACTTCACTGTTTACCTGACATGGCTTCCGGGGCT
T
GGGAGCCCCCCAAATGTGACCTATTTCGTGACCTACCAAAGCTATATCAAAACCGGTTGGCGACCAGTG
GAG
CATTGTGCAGGTATCAAGGCTCTGGTGTGTCCCCTGATGTGCCTGAAGAAACTGAACCTGTACTCCA
AG
TTCAAAGGACGAGTACAGGCAGCTTCCGCACACGGCAGGTCCCCACGGGTGGAGTCCCGGTACCTGGA
A
TACCTTTTTGACGTGGAGCTAGCCCCGCCCACCCTGGTGCTCACCCAGATGGAGAAGATCCTAAGGGTC
AAC
GCTACCTACCAGCTGCCACCTTGCATGCCGTCGCTGGAACTGAAGTACCAGGTGGAATTCTGGAAGG
AG
GGTCTGGGAAGCAAGACCCTGTTTCCTGACACTCCCTATGGCCAGCCAGTGCAGATTCCTCTCCAGCA
A
GGTGCTAGCCGACGCCACTGCCTCAGCGCCAGAACCGTCTATACCTTAATTGACATTAAGTACAGCCAG
TTC
TCTGAGCCCAGCTGCATCTTCCTAGAGGCTCCAGGGGACAAAAGAGCTGTCCTGGCAATGCCCTCAC
TC
TTGCTTCTACTGATAGCAGCCGTTGCAGCAGGTGTGGCATGGAAGATAATGAAAGGAAACCCCTGGTT
T
CAGGGGGTGAAGACGCCCCGGGCACTGGACTTTTCTGAATACAGATACCCAGTGGCAACCTTTCAGCCC
AGT
GGACCTGAGTTCTCTGATGACTTGATCCTTTGTCCCCAGAAGGAACTGACCATAAGGAACAGGCCAG
CC
CCTCAGGTCAGAAACCCAGCCACGCTACAGGCAGGACCAGAAAGAGACAGTACTGAGGATGAAGACGA
G
GACACAGACTACGATGACGACGGTGACAGCGTCCAGCCCTACCTGGAACGGCCCCTCTTCATCAGCGAG
AAG
CCCCGGGTTATGGAACACTCGGAGACAGACGAGTCTGGGGTGGATTCAGGGGGGCCTTGGACATCCC
CA
GTTGGGAGTGACGGCTCCTCTGCATGGGACTCTTCAGACAGGAGCTGGTCCAGCACAGGGGACTCCTC
A
TATAAGGATGAAGTTGGGTCTTCCAGCTGTTTGGACCGAAAGGAGCCGGACCAGGCGCCCTGTGGGGAT
TGG
CTCCAGGAGGCTCTCCCATGCCTGGAATTTTCTGAGGACTTGGGCACCGTGGAAGAGCCTCTGAAGG
AT
GGCCTCTCCGGGTGGAGGATTTCTGGTTCCTTATCCTCAAAGAGAGATCTGGCTCCTGTGGAGCCCCC
A
GTTTCTCTTCAGACACTGACTTTCTGCTGGGTCAACAATCCTGAGGGGGAGGAGGAACAGGAGGACGAG
GAG
GAAGAGGAGGAGGAGGAGGAGGAGGAAGACTGGGAATCAGAACCTAAGGGCAGCAATGCCGGCTGTT
GG
GGCACTTCAAGCGTGCAGAGGACGGAGGTCAGGGGCCGGATGCTGGGAGATTACTTGGTCAGGTGA


Translation (535 aa):
MWRADRWAPLLLFLLQSALGRPRLAPPRNVTLFSQNFTVYLTWLPGLGSPPNVTYFVTYQSYIKTGWRPV
E
HCAGIKALVCPLMCLKKLNLYSKFKGRVQAASAHGRSPRVESRYLEYLFD
VELAPPTLVLTQMEKILRV
N
ATYQLPPCMPSLELKYQVEFWKEGLGSK
TLFPDTPYGQPVQIPLQQGASRRHCLSARTVYTLIDIKYSQ
F
SEPSCIFLEAP
GDKRAVLAMPSLLLLLIAAVAAGVAWKIMKGNPWFQGVKTPRALDFSEYRYPVATFQP
S
GPEFSDDLILCPQKELTIRNRPAPQVRNPATLQAGPERDSTEDEDEDTDYDDDGDSVQPYLERPLFISE
K
PRVMEHSETDESGVDSGGPWTSPVGSDGSSAWDSSDRSWSSTGDSSYKDEVGSSSCLDRKEPDQAPCGD
W
LQEALPCLEFSEDLGTVEEPLKDGLSGWRISGSLSSKRDLAPVEPPVSLQTLTFCWVNNPEGEEEQEDE
E
EEEEEEEEEDWESEPKGSNAGCWGTSSVQRTEVRGRMLGDYLVR




Links Key
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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