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Report for CCDS18684.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18684.1 Public Mus musculus 4 S100pbp 23 108 98 CCDS HistoryNCBI Gene:74648Re-query CCDS DB by CCDS ID:18684.1Re-query CCDS DB by GeneID:74648See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18684.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049081.11 ENSMUSP00000039820.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049081.11Link to Ensembl Protein Viewer:ENSMUSP00000039820.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049081Re-query CCDS DB by Protein ID:ENSMUSP00000039820
Original member Current member EBI ENSMUST00000106061.8 ENSMUSP00000101676.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106061.8Link to Ensembl Protein Viewer:ENSMUSP00000101676.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106061Re-query CCDS DB by Protein ID:ENSMUSP00000101676
Original member NCBI NM_029036.3 NP_083312.1 Updated not alive Link to Nucleotide Sequence:NM_029036.3Link to Protein Sequence:NP_083312.1Re-query CCDS DB by Nucleotide ID:NM_029036Re-query CCDS DB by Protein ID:NP_083312
Current member NCBI NM_029036.4 NP_083312.1 Accepted alive Link to Nucleotide Sequence:NM_029036.4Link to Protein Sequence:NP_083312.1Re-query CCDS DB by Nucleotide ID:NM_029036Re-query CCDS DB by Protein ID:NP_083312Link to BLAST:NP_083312.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083312.1 396 Q9D5K4-1 396 100% 0 0

Chromosomal Locations for CCDS 18684.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 129150950 129151091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129155425 129155509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129178241 129178332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129180189 129180271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 129181742 129182530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1191 nt):
ATGACGTGTTCACTCTTGCCCTCTGAACAGTCTTCTGGTGCCTCTTTTCTGCCTAAAAGCAATGCCTCAT
TTCCTTGGGGTTCCTTGGATGAAGATGAGTTGGATGACTCCTTGTTGGAGTTTTCTGATGGAGAAGAAGA
TGATGGCCATTTCAGTTTCACAGAGGAAGAGATTGAGATGCTCTTGAAGGACGATGATGGTGGGCATAAT
GAGTATAGACCAAGAAAGAGTCAAATTCTACCTGATATTCCTCAAGAAAATTCTTTGTACAGCTTGGGAC
CAGCAGCTGAAACCCCTGGCTTCCTAAAACTACCTCAACTAAGTACATCAGTTGGTCATGGACCTACTCC
TAGTAAATCATTAAACAGACACTTTGTACTTGAAAAGAATCTTATAAAAGTAACTGTTGTCGCACCATTT
AATCCAACAGTTTGTGATCCTGTGCTTGATAAAGACAAGATCGATTCCTCCAAAGAAACGGAAAATCCTG
CCTCCCTTCGGGAACAGACGAGAGAAGATGACCCTCAACCTAATGAGAGTAAACGTTGCACTGAGCCTGA
AGGGGTCAGTCCCAATACCTCTGCTTGGGATGGGCCCCTGCTTTCTTCTCCTTCAAACAATAACATCGAA
CAAACTGCCTCTGATAAAAATATACCTGAAAGTAAGAAACCTACCCCTGTGTTCTCTCAGATCTCCAACC
ATTCAGAGGTCCCCAACAGGAAAAACAGTGGCTCACATAAATCAGGTTGTGAAGTGAGAATTCCAGTTGT
GTCCAGTTCATCAAACAGACATGCCTTTGACAAGGATTCTGGGGAGGCGAAAGGTGAGAGAAGACTAGGC
AAAGTCATTCCTGTTCTACAAACTAGAACCAGGATGTTTTCACAATCAGAGCTAGAAAAACAGAAGGACA
TTTATCTCAGCAAAGTCATTGCTCATATAGAAGATCCAGGGGACTCTAACCAAGGTACCTTGGGAGAGCT
AGATGCCCTGATGGATCAAGTTCATATGCAGCACCCAGACTGGCAGCATCCTTCAGATCTTACCACACGA
AACTACGCCCGGTTCCGACAGAGGCCTCTGCAGAGGTACAGTCTGAGTCAGTGGGTTGACAGAAACAAGC
GGAGCCACCATCGGTTCCAGCGTCTCCCAGACTTCTCCTACAGTCCATATGTCTCATCCCATCAACAGTG
A

Translation (396 aa):
MTCSLLPSEQSSGASFLPKSNASFPWGSLDEDELDDSLLEFSDGEEDDGHFSFTEEEIEMLLKDDDGGHN
EYRPRKSQILPDIPQENSLYSLGPAAETPGFLKLPQLSTSVGHGPTPSKSLNRHFVLEKNLIKVTVVAPF
NPTVCDPVLDKDKIDSSKETENPASLREQTREDDPQPNESKRCTEPEGVSPNTSAWDGPLLSSPSNNNIE
QTASDKNIPESKKPTPVFSQISNHSEVPNRKNSGSHKSGCEVRIPVVSSSSNRHAFDKDSGEAKGERRLG
KVIPVLQTRTRMFSQSELEKQKDIYLSKVIAHIEDPGDSNQGTLGELDALMDQVHMQHPDWQHPSDLTTR
NYARFRQRPLQRYSLSQWVDRNKRSHHRFQRLPDFSYSPYVSSHQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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