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Report for CCDS18641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18641.1 Public Mus musculus 4 Mrps15 23 108 98 CCDS HistoryNCBI Gene:66407Re-query CCDS DB by CCDS ID:18641.1Re-query CCDS DB by GeneID:66407See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18641.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030675.7 ENSMUSP00000030675.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030675.7Link to Ensembl Protein Viewer:ENSMUSP00000030675.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030675Re-query CCDS DB by Protein ID:ENSMUSP00000030675
Original member Current member NCBI NM_025544.2 NP_079820.2 Accepted alive Link to Nucleotide Sequence:NM_025544.2Link to Protein Sequence:NP_079820.2Re-query CCDS DB by Nucleotide ID:NM_025544Re-query CCDS DB by Protein ID:NP_079820Link to BLAST:NP_079820.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079820.2 258 Q9DC71 258 100% 0 0

Chromosomal Locations for CCDS 18641.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 126047070 126047199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126047434 126047478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126048635 126048713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126050480 126050528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126051325 126051409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126053500 126053558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126054961 126055152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 126055380 126055517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGCTGCGGGCCGCGTGGCGTGCGCTGAGCTCTGTTCGTGCCCAGGCGGTGACACGGGCCCCAGTCCCTG
CGCTGAGGGGCGGAAGTAGCGCCAGTCTGCTCTCTGCGCGCTGTGGCCTGCAGCCTCCGAGTCTACTGCG
CGCCGCGCGAGCATACGCCGCCGTCCAGAAACCAGTCCAACCCAAGCAGGACGATGAACCACCCTCCTCT
GCGTTCATCAAAGAATACAAGGACATCATCCCCAACATAGAGAAGGTTGATGATGTTGTGAAAAGAATCT
TGTCTTTGGAAATGGCCAGCAGGAAAGAGAAGTTAAAAATCAAGCAAGAACAATTGATGAACAAGATTGT
GGAAAACCCTGAGGATTCCAGAACCTTGGAAGCTCAAATCATTGCCTTGACTGTCAGGATCCGCAATTAT
GAAGAACACATGCAGAAACATCGAAAGGACAAAGCCCACAAACGCCATCTGCTGATGAGCATCGACCGGA
GGAAAAAGTTGCTCAAAATCCTCCGTCAGACCAACTATGATGTCTTCGAAAAGACATGCAAGGAGCTAGG
GGTGGAATATACCTTACCCCCTCTGCATTTCCAAAAGGTTCACCGCCGCTTCCTGGCCAAGAAGGCTCTG
TGCATTCGGGTTTACCAGGAGGTGCAAAAGCTGAAGAAGCAAAAAAGGGCCTTAAAAGCTGCTGCAGCTG
CTGCCAAAAAAGAAAAAAATGAGGGGGTGCCAGAGAACCCTTCAAATGCCGTACCAGAGAAGACCCAAGT
GAACTAA

Translation (258 aa):
MLRAAWRALSSVRAQAVTRAPVPALRGGSSASLLSARCGLQPPSLLRAARAYAAVQKPVQPKQDDEPPSS
AFIKEYKDIIPNIEKVDDVVKRILSLEMASRKEKLKIKQEQLMNKIVENPEDSRTLEAQIIALTVRIRNY
EEHMQKHRKDKAHKRHLLMSIDRRKKLLKILRQTNYDVFEKTCKELGVEYTLPPLHFQKVHRRFLAKKAL
CIRVYQEVQKLKKQKRALKAAAAAAKKEKNEGVPENPSNAVPEKTQVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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