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Report for CCDS18554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18554.1 Public Mus musculus 4 2610528J11Rik 23 108 98 CCDS HistoryNCBI Gene:66451Re-query CCDS DB by CCDS ID:18554.1Re-query CCDS DB by GeneID:66451See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030261.5 ENSMUSP00000030261.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030261.5Link to Ensembl Protein Viewer:ENSMUSP00000030261.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000030261Re-query CCDS DB by Protein ID:ENSMUSP00000030261
Original member Current member EBI ENSMUST00000106367.7 ENSMUSP00000101975.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106367.7Link to Ensembl Protein Viewer:ENSMUSP00000101975.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106367Re-query CCDS DB by Protein ID:ENSMUSP00000101975
Original member NCBI NM_025572.2 NP_079848.1 Updated not alive Link to Nucleotide Sequence:NM_025572.2Link to Protein Sequence:NP_079848.1Re-query CCDS DB by Nucleotide ID:NM_025572Re-query CCDS DB by Protein ID:NP_079848
Current member NCBI NM_025572.3 NP_079848.1 Accepted alive Link to Nucleotide Sequence:NM_025572.3Link to Protein Sequence:NP_079848.1Re-query CCDS DB by Nucleotide ID:NM_025572Re-query CCDS DB by Protein ID:NP_079848Link to BLAST:NP_079848.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079848.1 111 Q9CQM1 111 100% 0 0

Chromosomal Locations for CCDS 18554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118529293 118529311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118529479 118529795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (336 nt):
ATGATTGGAGGAAACACAACCATCATCTCAGGGGCCATCAATGCATCAACCGAGGCCCCTGGACTGGGCA
CCGGGGGCCGGGCATGGCCTGTGCTGGTAGGGGTTGTGCTGGGGGCGGTGGTCCTCTCCATTCTCATCGC
GCTGGCTGCCAAGTGCCACCTCTGCCGCCGATACCATGCCAGTTACAGGCATCGCCCGCTGTCCAGTGCA
GGGGGTGGGAACCGCCCACCGGTGGGTGAAGATGAGGATGATGATGGCTTCATCGAGGACAATTACATCC
AGCCTGGGGCTGGTGAGATGGAGACGACGGGAAGCCGGGACCACTTCTCTCTCTGA

Translation (111 aa):
MIGGNTTIISGAINASTEAPGLGTGGRAWPVLVGVVLGAVVLSILIALAAKCHLCRRYHASYRHRPLSSA
GGGNRPPVGEDEDDDGFIEDNYIQPGAGEMETTGSRDHFSL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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