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Report for CCDS18543.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18543.1 Public Mus musculus 4 Artn 23 108 98 CCDS HistoryNCBI Gene:11876Re-query CCDS DB by CCDS ID:18543.1Re-query CCDS DB by GeneID:11876See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18543.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070816.8 ENSMUSP00000064521.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070816.8Link to Ensembl Protein Viewer:ENSMUSP00000064521.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000070816Re-query CCDS DB by Protein ID:ENSMUSP00000064521
Original member Current member EBI ENSMUST00000097913.8 ENSMUSP00000095526.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000097913.8Link to Ensembl Protein Viewer:ENSMUSP00000095526.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000097913Re-query CCDS DB by Protein ID:ENSMUSP00000095526
Original member Current member NCBI NM_001284191.1 NP_001271120.1 Accepted alive Link to Nucleotide Sequence:NM_001284191.1Link to Protein Sequence:NP_001271120.1Re-query CCDS DB by Nucleotide ID:NM_001284191Re-query CCDS DB by Protein ID:NP_001271120Link to BLAST:NP_001271120.1
Original member Current member NCBI NM_001284193.1 NP_001271122.1 Accepted alive Link to Nucleotide Sequence:NM_001284193.1Link to Protein Sequence:NP_001271122.1Re-query CCDS DB by Nucleotide ID:NM_001284193Re-query CCDS DB by Protein ID:NP_001271122Link to BLAST:NP_001271122.1
Original member Current member NCBI NM_009711.4 NP_033841.1 Accepted alive Link to Nucleotide Sequence:NM_009711.4Link to Protein Sequence:NP_033841.1Re-query CCDS DB by Nucleotide ID:NM_009711Re-query CCDS DB by Protein ID:NP_033841Link to BLAST:NP_033841.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271120.1 224 Q9Z0L2-1 224 100% 0 0
NP_001271122.1 224 Q9Z0L2-1 224 100% 0 0
NP_033841.1 224 Q9Z0L2-1 224 100% 0 0

Chromosomal Locations for CCDS 18543.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 117926593 117927068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117927161 117927299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 117927624 117927683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (675 nt):
ATGGAACTGGGACTTGCAGAGCCTACTGCATTGTCCCACTGCCTCCGGCCTAGGTGGCAGTCAGCCTGGT
GGCCAACCCTAGCTGTTCTAGCCCTGCTGAGCTGCGTCACAGAAGCTTCCCTGGACCCAATGTCCCGCAG
CCCCGCCGCTCGCGACGGTCCCTCACCGGTCTTGGCGCCCCCCACGGACCACCTGCCTGGGGGACACACT
GCGCATTTGTGCAGCGAAAGAACCCTGCGACCCCCGCCTCAGTCTCCTCAGCCCGCACCCCCGCCGCCTG
GTCCCGCGCTCCAGTCTCCTCCCGCTGCGCTCCGCGGGGCACGCGCGGCGCGTGCAGGAACCCGGAGCAG
CCGCGCACGGACCACAGATGCGCGCGGCTGCCGCCTGCGCTCGCAGCTGGTGCCGGTGAGTGCGCTCGGC
CTAGGCCACAGCTCCGACGAGCTGATACGTTTCCGCTTCTGCAGCGGCTCGTGCCGCCGAGCACGCTCCC
AGCACGATCTCAGTCTGGCCAGCCTACTGGGCGCTGGGGCCCTACGGTCGCCTCCCGGGTCCCGGCCGAT
CAGCCAGCCCTGCTGCCGGCCCACTCGCTATGAGGCCGTCTCCTTCATGGACGTGAACAGCACCTGGAGG
ACCGTGGACCACCTCTCCGCCACTGCCTGCGGCTGTCTGGGCTGA

Translation (224 aa):
MELGLAEPTALSHCLRPRWQSAWWPTLAVLALLSCVTEASLDPMSRSPAARDGPSPVLAPPTDHLPGGHT
AHLCSERTLRPPPQSPQPAPPPPGPALQSPPAALRGARAARAGTRSSRARTTDARGCRLRSQLVPVSALG
LGHSSDELIRFRFCSGSCRRARSQHDLSLASLLGAGALRSPPGSRPISQPCCRPTRYEAVSFMDVNSTWR
TVDHLSATACGCLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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