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Report for CCDS18517.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18517.1 Public Mus musculus 4 Toe1 23 108 98 CCDS HistoryNCBI Gene:68276Re-query CCDS DB by CCDS ID:18517.1Re-query CCDS DB by GeneID:68276See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18517.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030451.9 ENSMUSP00000030451.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030451.9Link to Ensembl Protein Viewer:ENSMUSP00000030451.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000030451Re-query CCDS DB by Protein ID:ENSMUSP00000030451
Original member NCBI NM_026654.2 NP_080930.1 Updated not alive Link to Nucleotide Sequence:NM_026654.2Link to Protein Sequence:NP_080930.1Re-query CCDS DB by Nucleotide ID:NM_026654Re-query CCDS DB by Protein ID:NP_080930
Current member NCBI NM_026654.3 NP_080930.1 Accepted alive Link to Nucleotide Sequence:NM_026654.3Link to Protein Sequence:NP_080930.1Re-query CCDS DB by Nucleotide ID:NM_026654Re-query CCDS DB by Protein ID:NP_080930Link to BLAST:NP_080930.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080930.1 511 Q9D2E2-1 511 100% 0 0

Chromosomal Locations for CCDS 18517.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116804435 116805055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116805132 116805294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116805486 116805745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116805985 116806143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116806259 116806355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116806486 116806526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116806617 116806759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116807468 116807519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGCCGCGGACAGTGACGATGATGTGCCTCCAGTTCCAACGCCCTCTGACGGTGGTGTCAACAAAAACA
CACAACCTGCAGAGGAGTTTGTGGTTCGGGTTCCTGTGGTAGACGTGCAGAGTGACAACTTCAAGGAGAT
ATGGCCATCACTCTTGCTAGCCTTAAAGACAGCTAGCTTTGTGGCTGTGGACACGGAGCTGAGTGGGCTC
GGGGATAGGAAGAGTTTGCTGAACCAGTGCATTGAGGAACGTTACAAGGCCGTGTGTCATGCTGCCAGGA
CCCGTTCTGTCCTGTCCCTGGGCCTCGCCTGCTTCAGGCAGCAACCAGATAAGGGTGAAAATTCTTACTT
GGCTCAAGTGTTCAATCTCACCCTGCTATGCATAGAGGAGTACGTTATAGAACCGAAGTCTGTGCAGTTC
CTGGTACAGCATGGCTTCAACTTCAACCGGCAGTACGCCCAGGGTATCCCCTACCATAAGGGCAATGACA
AGGGAGATGAGAGCCAGAGCCAGTCGGTACGGACGCTGTTCCTTGAACTGATTCGGGCCCGACGGCCCCT
GGTGCTACATAATGGCCTTATAGACTTGGTGTTCCTGTACCAGAATTTCTACGCGCACCTGCCTGAGAAC
TTGGGGACCTTCACTGCTGACCTGTGTGAGATGTTCCCAGCAGGCATCTATGACACCAAATATGCCGCCG
AGTTCCATGCCCGATTTGTAGCTTCCTACTTAGAATACGCTTTCCGGAAATGTGAGCGGGAGAATGGGAA
GCAGCGGGCAGCTGGCAGCCCACATCTTGCCCTGGAATTCTGCAGCTATCCATCTAGCATGAGCGGGCAC
ATTGACTACCGCTGCTGTATGTCCCCTGGGACCTGCCGTCGTTCTCGTACCACTGGCATCTGTGACAAGT
TCTCGGCCTATGGCTGGTGTCCTCTGGGACCACAGTGTCCTCAGTCACACGATATTGACCTTATAATTGA
CACTGATGAGGCTGTGGCAGAAGATAAGCGGCGGAGACGGCGACGTAAGGACAAACGGAAGAGGTCTTTA
CAGAGCCAACCAGGGACACAGACCCTTGCGGAAGCTGAAGATGGTCCTCCCACAAAACAGGTCTGTGAAG
ATAGCCTCGAGACTGAGAAAATGGAACAAAAAGTGGCAGAAGGTGAGGCTGGGGATCAGCCTGGCTCCAG
GGAAGGTCACACAAGTAGCTTGGAGATGGCACATAGGAGGACAAGTGCTGAAACAGCTGATGTGGCCACC
TCAGAGCTGCTGGTGAACCAAGCCAGCACTAACCCCGTGCCTGGGGACGGACTGCATCGTGCTGGTTTTG
ACGCCTTTATGACAGGCTATGTGATGGCCTATGTGGGCCTGAGCCAGGGACTTCAACTCTGCAGCTCTGA
ACCTTGGCTTCCTGAATGTCACAACAAGGTATATCTAAGTGGCAAAACTGTACCCCTCACAGTGACCAAG
AGCCAGTTTTCCCGTCCATCCAAAGCCCACAACCAGAAAATGAAGCTGGCTTGGGGCAGCAGCTGA

Translation (511 aa):
MAADSDDDVPPVPTPSDGGVNKNTQPAEEFVVRVPVVDVQSDNFKEIWPSLLLALKTASFVAVDTELSGL
GDRKSLLNQCIEERYKAVCHAARTRSVLSLGLACFRQQPDKGENSYLAQVFNLTLLCIEEYVIEPKSVQF
LVQHGFNFNRQYAQGIPYHKGNDKGDESQSQSVRTLFLELIRARRPLVLHNGLIDLVFLYQNFYAHLPEN
LGTFTADLCEMFPAGIYDTKYAAEFHARFVASYLEYAFRKCERENGKQRAAGSPHLALEFCSYPSSMSGH
IDYRCCMSPGTCRRSRTTGICDKFSAYGWCPLGPQCPQSHDIDLIIDTDEAVAEDKRRRRRRKDKRKRSL
QSQPGTQTLAEAEDGPPTKQVCEDSLETEKMEQKVAEGEAGDQPGSREGHTSSLEMAHRRTSAETADVAT
SELLVNQASTNPVPGDGLHRAGFDAFMTGYVMAYVGLSQGLQLCSSEPWLPECHNKVYLSGKTVPLTVTK
SQFSRPSKAHNQKMKLAWGSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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