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Report for CCDS18448.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18448.1 Public Mus musculus 4 Zyg11b 23 108 98 CCDS HistoryNCBI Gene:414872Re-query CCDS DB by CCDS ID:18448.1Re-query CCDS DB by GeneID:414872See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18448.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043616.6 ENSMUSP00000043844.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043616.6Link to Ensembl Protein Viewer:ENSMUSP00000043844.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043616Re-query CCDS DB by Protein ID:ENSMUSP00000043844
Original member NCBI NM_001033634.3 NP_001028806.2 Updated not alive Link to Nucleotide Sequence:NM_001033634.3Link to Protein Sequence:NP_001028806.2Re-query CCDS DB by Nucleotide ID:NM_001033634Re-query CCDS DB by Protein ID:NP_001028806
Current member NCBI NM_001033634.4 NP_001028806.2 Accepted alive Link to Nucleotide Sequence:NM_001033634.4Link to Protein Sequence:NP_001028806.2Re-query CCDS DB by Nucleotide ID:NM_001033634Re-query CCDS DB by Protein ID:NP_001028806Link to BLAST:NP_001028806.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028806.2 744 Q3UFS0-1 744 100% 0 0

Chromosomal Locations for CCDS 18448.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 108236004 108236194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108237342 108237439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108241821 108241873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108242000 108242197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108244726 108244773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108244876 108245037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108250495 108250545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108250774 108250873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108252152 108252216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108255201 108255377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108259950 108260090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108265818 108266572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108272218 108272383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 108300891 108300920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2235 nt):
ATGCCGGAGGACCAGGCCCACGCAGCCATGGAGGAAGCCTCTCCCTATTCCTTGCTTGACATCTGCTTGA
GT
TTCCTGACCACCAACCTCGAGAAGTTCTGCTCAGCACGCCAAGATGGAACCCTGTGTCTGCAGGAGCC
T
GGGGTGTTCCCACAGGAGGTGGCTGACCGGCTTCTTCAGACTATAGCATTCCACGGTCTCCTGAATGAT
GGA
ACTGTGGGAATTTTCAGAGGTAACCAGATGCGCCTAAAGCGAGCTTGCATTCGCAAAGCAAAGATTT
CC
GCTGTTGCTTTCCGGAAAGCCTTTTGCCACCACAAGCTAGTAGAACTTGATGCCACGGGTGTGAATGC
T
GACATCACTATCACAGACATCATAAGTGGCCTTGGCAGTAACAAGTGGATCCAGCAAAATCTTCAGTGC
TTA
GTACTAAACTCATTAACTCTGTCCCTCGAGGATCCATATGAGCGGTGCTTCAGCCGGCTCTCTGGTC
TT
CGAGCTCTGAGCATCACTAATGTGCTCTTTTACAATGAAGATCTGGCTGAAGTTGCTTCGCTGCCTAG
A
CTGGAGAGCCTGGATATTTCTAACACCTCAATCACAGATATCACTGCCCTGCTGGCCTGCAAAGACAGA
CTC
AAGTCTCTCACCATGCACCATCTGAAATGTTTAAAAATGACTACTACCCAGATCCTGGATGTCGTTC
GG
GAGCTAAAACATCTGAACCATCTTGACATCTCAGATGATAAACAGTTCACGTCAGACATAGCCCTTCG
A
TTGTTAGAGCAAAAGGACATCTTGCCCAATCTTGTGTCCCTGGATGTTTCAGGGAGAAAGCATGTGACA
GAC
AAAGCTGTCGAAGCCTTTATACAGCAGCGGCCTAGCATGCAGTTCGTAGGGTTGCTGGCTACAGATG
CT
GGATACTCTGAATTCCTTATGGGCAAAGGACACTTGAAGGTCTCTGGAGAAGCCAACGAAACCCAGAT
T
GCAGAGGCGCTGAGGCGGTACAGCGAGCGGGCGTTTTTCGTTAGGGAGGCTTTGTTTCATCTCTTTAGC
CTG
ACTCATGTGATGGAGAAAACGAAGCCAGACATTTTAAAGCTTGTGGTTACTGGGATGAGAAACCACC
CA
ATGAATTTGCCCGTGCAGCTGGCTGCAAGTGCCTGTGTGTTTAACTTAACTAAGCAGGACCTTGCTTT
A
GGCATGCCTGTCCGGCTCCTCGCTGATGTGACCCATTTGCTGCTCAAGGCCATGGAACATTTTCCTAAT
CAC
CAACAGTTACAGAAGAATTGCCTCCTCTCACTTTGCAGTGACCGGATTCTTCAAGATGTTCCATTTA
AT
AGGTTTGAAGCAGCCAAGCTTGTCATGCAGTGGCTTTGCAACCACGAAGATCAGAACATGCAACGCAT
G
GCCGTGGCTATCATTTCCATCCTGGCCGCCAAGCTCTCTACAGAACAAACTGCACAGCTTGGTGCTGAG
CTC
TTCATTGTCAGGCAACTTCTTCAAATAGTGAAGCAGAAAACTAATCAGAATTCCGTGGACACTACGT
TG
AAGTTTACTTTGAGTGCACTTTGGAACCTCACAGATGAGTCCCCAACCACGTGCAGACACTTCATTGA
A
AACCAAGGGCTGGAGCTCTTCATGAGGGTTCTAGAGTCTTTCCCAACTGAGTCATCCATTCAACAAAAG
GTT
CTAGGACTTTTGAACAACATAGCTGAAGTACAAGAGCTGCATTCTGAACTAATGTGGAAGGATTTTA
TA
GACCACATCAGCAGTCTCCTACACAGTGTTGAAGTAGAAGTCAGTTACTTCGCAGCTGGAATTATCGC
C
CATTTAATATCCAGAGGTGAACAAGCATGGACCTTGAGCCGAAGCCAGAGGAATTCTCTTCTTGATGAT
TTG
CATTCAGCTATTTTGAAATGGCCAACTCCAGAGTGTGAGATGGTAGCATACAGGTCCTTTAATCCAT
TC
TTTCCACTACTTGGCTGTTTTACGACTCCTGGAGTCCAGCTGTGGGCAGTTTGGGCCATGCAGCACGT
C
TGCAGCAAGAATCCTTCAAGGTATTGCAGCATGCTGATTGAAGAAGGAGGACTGCAGCATTTGTATAAC
ATC
AAAGAACACGAGCAGACAGATCCCTATGTCCAGCAGATTGCTGTGGCCATTCTGGACAGTTTAGAGA
AA
CACATTGTGCGCCATGGAAGGCCCCCTCCCTGTAAAAAGCAGCCCCAGGCCCGGCTGAATTGA


Translation (744 aa):
MPEDQAHAAMEEASPYSLLDICLSFLTTNLEKFCSARQDGTLCLQEPGVFPQEVADRLLQTIAFHGLLND
G
TVGIFRGNQMRLKRACIRKAKISAVAFRKAFCHHKLVELDATGVNADITITDIISGLGSNKWIQQNLQC
L
VLNSLTLSLEDPYERCFSRLSGLRALSITNVLFYNEDLAEVASLPRLESLDISNTSITDITALLACKDR
L
KSLTMHHLKCLKMTTTQILDVVRELKHLNHLDISDDKQFTSDIALRLLEQKDILPNLVSLDVSGRKHVT
D
KAVEAFIQQRPSMQFVGLLATDAGYSEFLMGKGHLK
VSGEANETQIAEALRRYSERAFFVREALFHLFS
L
THVMEKTKPDILK
LVVTGMRNHPMNLPVQLAASACVFNLTKQDLALGMPVRLLADVTHLLLKAMEHFPN
H
QQ
LQKNCLLSLCSDRILQDVPFNRFEAAKLVMQWLCNHEDQNMQRMAVAIISILAAKLSTEQTAQLGAE
L
FIVR
QLLQIVKQKTNQNSVDTTLKFTLSALWNLTDESPTTCRHFIENQGLELFMRVLESFPTESSIQQK
V
LGLL
NNIAEVQELHSELMWKDFIDHISSLLHSVEVEVSYFAAGIIAHLISRGEQAWTLSRSQRNSLLDD
L
HSAILKWPTPECEMVAYRSFNPFFPLLGCFTTPGVQLWAVWAMQHVCSKNPSRYCSMLIEEGGLQHLYN
I
KEHEQTDPYVQQIAVAILDSLEKHIVRHGRPPPCKKQPQARLN




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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