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Report for CCDS18393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18393.1 Public Mus musculus 4 Jak1 23 108 98 CCDS HistoryNCBI Gene:16451Re-query CCDS DB by CCDS ID:18393.1Re-query CCDS DB by GeneID:16451See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18393.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102781.9 ENSMUSP00000099842.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102781.9Link to Ensembl Protein Viewer:ENSMUSP00000099842.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102781Re-query CCDS DB by Protein ID:ENSMUSP00000099842
Original member Current member NCBI NM_146145.2 NP_666257.2 Accepted alive Link to Nucleotide Sequence:NM_146145.2Link to Protein Sequence:NP_666257.2Re-query CCDS DB by Nucleotide ID:NM_146145Re-query CCDS DB by Protein ID:NP_666257Link to BLAST:NP_666257.2

Chromosomal Locations for CCDS 18393.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 101153495 101153590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101154538 101154648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101155016 101155133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101156393 101156565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101156952 101157076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101157754 101157946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101158814 101158908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101159015 101159165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101160032 101160183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101161807 101161942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101162849 101162976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101163658 101163745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101164458 101164601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101166543 101166649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101171235 101171421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101174086 101174209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101175074 101175231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101177568 101177756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101179455 101179794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101181780 101181943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101184337 101184490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101189079 101189202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101191475 101191673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 101193783 101193788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3462 nt):
ATGCAGTATCTAAATATAAAAGAGGACTGCAATGCCATGGCGTTCTGTGCTAAAATGAGGAGCTTCAAGA
AG
ACTGAGGTGAAGCAGGTGGTCCCTGAGCCTGGAGTGGAGGTGACTTTCTATCTGTTGGACAGGGAGCC
C
CTCCGCCTGGGCAGCGGAGAGTATACAGCCGAGGAGCTGTGCATCAGGGCCGCCCAGGAGTGCAGTATC
TCT
CCTCTCTGTCACAACCTCTTCGCCCTGTACGATGAGAGCACCAAGCTCTGGTACGCTCCGAACCGAA
TC
ATCACTGTGGATGACAAAACGTCTCTCCGGCTCCACTACCGCATGAGGTTCTACTTTACCAACTGGCA
C
GGAACCAATGACAACGAACAGTCTGTATGGCGACATTCTCCAAAGAAGCAGAAAAACGGCTATGAGAAG
AAA
AGGGTTCCAGAAGCAACCCCACTCCTTGATGCCAGTTCACTGGAGTATCTGTTTGCACAGGGACAGT
AT
GATTTGATCAAATGCCTGGCTCCCATTCGGGACCCCAAGACGGAGCAAGACGGACATGATATTGAAAA
T
GAGTGCCTGGGCATGGCGGTCCTGGCCATCTCCCACTATGCCATGATGAAGAAGATGCAGTTGCCGGAA
CTT
CCCAAAGACATCAGCTACAAGCGATATATTCCAGAAACATTGAATAAATCCATCAGACAGAGGAACC
TT
CTTACCAGGATGCGAATAAATAATGTTTTCAAGGATTTCTTGAAGGAATTTAACAACAAGACCATCTG
T
GACAGCAGTGTGTCTACACATGACCTGAAGGTGAAATACCTGGCTACCTTGGAAACTTTGACAAAACAT
TAT
GGAGCTGAAATATTTGAGACTTCTATGCTACTGATTTCATCAGAAAATGAATTGAGTCGATGCCATT
CG
AATGACAGTGGCAATGTTCTCTATGAGGTCATGGTGACTGGAAATCTCGGGATCCAGTGGCGGCAGAA
A
CCAAATGTTGTTCCTGTTGAAAAGGAAAAAAATAAACTGAAGCGGAAAAAACTGGAATATAATAAACAC
AAG
AAGGATGATGAGAGAAACAAACTCCGGGAAGAGTGGAACAATTTTTCCTATTTCCCTGAAATCACCC
AC
ATTGTAATAAAGGAGTCTGTGGTCAGCATTAACAAACAGGACAACAAAAACATGGAACTCAAGCTCTC
T
TCTCGAGAGGAAGCCTTGTCCTTTGTGTCCCTGGTGGATGGCTACTTCCGGCTCACTGCAGATGCCCAC
CAT
TACCTCTGTACTGATGTGGCTCCCCCACTGATTGTCCACAATATACAGAACGGCTGCCACGGTCCAA
TC
TGCACAGAATATGCCATCAATAAGCTGCGGCAGGAAGGGAGTGAAGAGGGGATGTACGTGCTGAGGTG
G
AGCTGCACCGACTTTGACAACATTCTTATGACTGTCACCTGCTTTGAAAAGTCTGAGGTATTGGGTGGC
CAG
AAGCAGTTCAAGAACTTTCAGATTGAGGTACAGAAGGGCCGCTACAGCCTGCATGGCTCTATGGACC
AC
TTTCCCAGCCTGCGAGACCTCATGAACCACCTCAAGAAGCAGATCCTGCGCACGGACAACATAAGCTT
T
GTGCTGAAACGATGCTGTCAGCCTAAGCCTCGAGAAATCTCCAATCTGCTCGTAGCCACTAAGAAAGCC
CAG
GAGTGGCAGCCTGTCTACTCCATGAGCCAGCTGAGCTTTGATCGGATCCTTAAGAAAGATATTATAC
AA
GGTGAGCACCTTGGCAGAGGCACAAGAACACATATCTATTCTGGGACCCTGCTGGACTACAAGGATGA
G
GAAGGAATTGCTGAAGAGAAGAAGATAAAAGTGATCCTCAAAGTCCTAGACCCCAGCCACCGGGACATC
TCT
CTGGCCTTCTTTGAGGCTGCTAGCATGATGAGACAGGTTTCCCACAAACATATAGTGTACCTCTACG
GC
GTGTGTGTCCGAGATGTGGAAAATATCATGGTGGAAGAGTTTGTGGAGGGGGGGCCGTTGGATCTCTT
C
ATGCACCGGAAAAGTGATGCGCTTACTACCCCCTGGAAGTTCAAGGTTGCCAAACAGCTGGCCAGTGCC
CTG
AGTTACTTGGAAGATAAAGACCTGGTTCATGGAAATGTGTGCACTAAAAACCTCCTTCTGGCCCGTG
AG
GGCATTGACAGTGACATTGGCCCGTTCATCAAGCTTAGTGACCCTGGCATCCCAGTCTCTGTGCTGAC
C
AGGCAAGAGTGCATAGAGCGAATCCCCTGGATCGCTCCTGAGTGTGTTGAAGACTCCAAGAACCTGAGT
GTG
GCTGCTGACAAGTGGAGCTTTGGAACCACGCTCTGGGAAATCTGCTACAACGGAGAGATTCCTCTCA
AA
GACAAGACCCTCATTGAGAAAGAGAGGTTTTATGAAAGCCGCTGCAGGCCTGTGACTCCATCTTGCAA
G
GAGCTAGCTGACCTCATGACTCGCTGCATGAACTATGACCCCAACCAGAGACCCTTCTTCCGAGCCATC
ATG
AGGGACATTAACAAGCTGGAGGAGCAGAATCCAGACATTGTTTCAGAAAAGCAGCCAACAACAGAGG
TG
GACCCCACTCACTTTGAAAAGCGGTTCCTGAAGAGGATTCGTGACTTGGGAGAGGGTCACTTTGGGAA
G
GTTGAGCTCTGCAGATATGATCCTGAGGGAGACAACACAGGGGAGCAGGTAGCTGTCAAGTCCCTGAAG
CCT
GAGAGTGGAGGTAACCACATAGCTGATCTGAAGAAGGAGATAGAGATCTTACGGAACCTCTACCATG
AG
AACATTGTGAAGTACAAAGGAATCTGCATGGAAGACGGAGGCAATGGTATCAAGCTCATCATGGAGTT
T
CTGCCTTCGGGAAGCCTAAAGGAGTATCTGCCAAAGAATAAGAACAAAATCAACCTCAAACAGCAGCTA
AAA
TATGCCATCCAGATTTGTAAGGGGATGGACTACTTGGGTTCTCGGCAATACGTTCACCGGGACTTAG
CA
GCAAGAAATGTCCTTGTTGAGAGTGAGCATCAAGTGAAGATCGGAGACTTTGGTTTAACCAAAGCAAT
T
GAAACCGATAAGGAGTACTACACAGTCAAGGACGACCGGGACAGCCCAGTGTTCTGGTACGCTCCGGAA
TGT
TTAATCCAGTGTAAATTTTATATCGCCTCTGATGTCTGGTCTTTTGGAGTGACACTGCACGAGCTGC
TC
ACTTACTGTGACTCAGATTTTAGTCCCATGGCCTTGTTCCTGAAAATGATAGGCCCAACTCATGGCCA
G
ATGACAGTGACACGGCTTGTGAATACTCTGAAAGAAGGAAAGCGTCTGCCATGTCCACCCAACTGTCCT
GAT
GAGGTTTATCAGCTTATGAGAAAATGCTGGGAATTCCAACCATCTAACCGGACAACTTTTCAGAACC
TT
ATTGAAGGATTTGAAGCACTTTTAAAATAA


Translation (1153 aa):
MQYLNIKEDCNAMAFCAKMRSFKKTEVKQVVPEPGVEVTFYLLDREPLRLGSGEYTAEELCIRAAQECSI
S
PLCHNLFALYDESTKLWYAPNRIITVDDKTSLRLHYRM
RFYFTNWHGTNDNEQSVWRHSPKKQKNGYEK
K
RVPEATPLLDASSLEYLFAQ
GQYDLIKCLAPIRDPKTEQDGHDIENECLGMAVLAISHYAMMKKMQLPE
L
PKDI
SYKRYIPETLNKSIRQRNLLTRMRINNVFKDFLKEFNNKTICDSSVSTHDLKVKYLATLETLTKH
Y
GAEIFETSMLLISSENELSRCHSNDSGNVLYEVMVTGNLGIQWRQKPN
VVPVEKEKNKLKRKKLEYNKH
K
KDDERNKLREEWNNFSYFPEITHIVIKESVVSINKQDNKNM
ELKLSSREEALSFVSLVDGYFRLTADAH
H
YLCTDVAPPLIVHNIQNGCHGPI
CTEYAINKLRQEGSEEGMYVLRWSCTDFDNILMTVTCFEKSEVLGG
Q
KQFKNFQIEVQKGRYSLHGSMDHFPSLRDLMNHLKKQILRTDNISFVLKRCCQPKPR
EISNLLVATKKA
Q
EWQPVYSMSQLSFDRILKKDIIQ
GEHLGRGTRTHIYSGTLLDYKDEEGIAEEKKIKVILKVLDPSHRDI
S
L
AFFEAASMMRQVSHKHIVYLYGVCVRDVENIMVEEFVEGGPLDLFMHRKSDALTTPWKFKVAKQLASA
L
SYL
EDKDLVHGNVCTKNLLLAREGIDSDIGPFIKLSDPGIPVSVLTRQECIERIPWIAPECVEDSKNLS
V
AADKWSFGTTLWEICYNGEIPLKDKTLIE
KERFYESRCRPVTPSCKELADLMTRCMNYDPNQRPFFRAI
M
RDINKLEEQ
NPDIVSEKQPTTEVDPTHFEKRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLK
P
ESGGNHIADLKKEIEILRNLYHENIVKYKGICMED
GGNGIKLIMEFLPSGSLKEYLPKNKNKINLKQQL
K
YAIQICK
GMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPE
C
LIQCKFYIASDVWSFGVTLHELLTYCDSDFSPMA
LFLKMIGPTHGQMTVTRLVNTLKEGKRLPCPPNCP
D
E
VYQLMRKCWEFQPSNRTTFQNLIEGFEALLK



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser