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Report for CCDS18322.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18322.1 Public Mus musculus 4 Ifna12 23 108 98 CCDS HistoryNCBI Gene:242519Re-query CCDS DB by CCDS ID:18322.1Re-query CCDS DB by GeneID:242519See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18322.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102806.1 ENSMUSP00000099870.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102806.1Link to Ensembl Protein Viewer:ENSMUSP00000099870.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102806Re-query CCDS DB by Protein ID:ENSMUSP00000099870
Original member Current member NCBI NM_177361.2 NP_796335.1 Accepted alive Link to Nucleotide Sequence:NM_177361.2Link to Protein Sequence:NP_796335.1Re-query CCDS DB by Nucleotide ID:NM_177361Re-query CCDS DB by Protein ID:NP_796335Link to BLAST:NP_796335.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796335.1 189 Q80SS5 189 100% 0 0

Chromosomal Locations for CCDS 18322.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 88602739 88603308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (570 nt):
ATGGCTAGGCTCTGTGCTTTCCTGATGACCCTGCTAGTGATGAGCTACTGGTCAACCTGCTCTCTAGGAT
GTGACCTGCCTCAGACTCATAACCTCAGGAACAAGAGAGCCTTGACTCTCCTGGCACAAATGAGGAGACT
CTCCCCTCTCTCCTGCCTGAAGGACAGAAAGAACTTTAGATTCCCCCAGGAGAAGGTGGATGCCCAGCAG
ATCAAGAAGGCTCAAGTCATCCCTGTCCTGAGTGAGCTGACCCAGCAGATCCTGACCCTCTTCACATCAA
AGGACTCATCTGCTGCATGGAATACAACCCTCCTAGACTCATTCTGCAATGACCTCCATCAGCAGCTCAA
TGACCTGCAAGGCTGTCTGATGCAGCAGGTGGGGGTGCAGGAGCCTCCCCTGACCCAGGAAGACTCCCTG
CTGGCTGTGAGGAAATACTTCCACAGGATCACTGTGTACCTGAGAGAGAAGAAACACAGCCCCTGTGCCT
GGGAGGTGGTCAGAGCAGAAGTCTGGAGAACCCTGTCTTCCTCAGCTAAGTTGCTGGCAAGACTGAGTGA
GAAGGAGTGA

Translation (189 aa):
MARLCAFLMTLLVMSYWSTCSLGCDLPQTHNLRNKRALTLLAQMRRLSPLSCLKDRKNFRFPQEKVDAQQ
IKKAQVIPVLSELTQQILTLFTSKDSSAAWNTTLLDSFCNDLHQQLNDLQGCLMQQVGVQEPPLTQEDSL
LAVRKYFHRITVYLREKKHSPCAWEVVRAEVWRTLSSSAKLLARLSEKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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