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Report for CCDS18173.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18173.1 Public Mus musculus 4 Baat 23 108 98 CCDS HistoryNCBI Gene:12012Re-query CCDS DB by CCDS ID:18173.1Re-query CCDS DB by GeneID:12012See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18173.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043056.8 ENSMUSP00000041983.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043056.8Link to Ensembl Protein Viewer:ENSMUSP00000041983.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000043056Re-query CCDS DB by Protein ID:ENSMUSP00000041983
Original member Current member EBI ENSMUST00000166036.1 ENSMUSP00000129603.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000166036.1Link to Ensembl Protein Viewer:ENSMUSP00000129603.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000166036Re-query CCDS DB by Protein ID:ENSMUSP00000129603
Original member Current member NCBI NM_007519.3 NP_031545.2 Accepted alive Link to Nucleotide Sequence:NM_007519.3Link to Protein Sequence:NP_031545.2Re-query CCDS DB by Nucleotide ID:NM_007519Re-query CCDS DB by Protein ID:NP_031545Link to BLAST:NP_031545.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031545.2 420 Q91X34 420 100% 0 0

Chromosomal Locations for CCDS 18173.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 49489820 49490413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49499636 49499838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 49502655 49503120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGGCCAAGCTGACAGCTGTTCCTCTCAGTGCTCTTGTTGATGAGCCTGTGCACATCCAGGTCACAGGCC
TGGCCCCCTTTCAGGTGGTGTGCCTTCAGGCATCACTGAAAGATGAGAAGGGAAACCTGTTTAGTTCTCA
GGCCTTCTACAGGGCCAGTGAAGTGGGTGAGGTAGATCTGGAGCATGACCCCTCACTTGGAGGAGACTAT
ATGGGGGTCCACCCCATGGGCCTTTTCTGGTCCTTGAAACCTGAAAAGCTATTGGGTAGATTGATAAAAA
GAGATGTGATGAATAGCCCCTACCAAATCCACATAAAAGCTTGCCATCCATACTTTCCATTACAAGACAT
AGTCGTCAGTCCTCCCTTGGATAGCCTGACTCTGGAAAGGTGGTATGTGGCACCTGGGGTCAAGAGGATC
CAGGTAAAGGAAAGCCGCATCCGGGGAGCCCTGTTTCTGCCTCCAGGAGAAGGTCCTTTTCCAGGGGTCA
TTGACTTGTTTGGAGGTGCTGGTGGATTGATGGAGTTCCGGGCCAGTCTTCTGGCAAGTCGTGGCTTTGC
CACCTTAGCTCTGGCTTACTGGAACTATGATGACCTGCCTTCTCGACTGGAGAAGGTAGATCTAGAATAT
TTTGAAGAAGGTGTAGAGTTTCTCCTGAGACATCCTAAGGTCCTCGGCCCAGGTGTTGGCATCCTTTCTG
TATGCATTGGAGCAGAGATTGGACTTTCTATGGCTATTAACCTAAAACAAATAAGAGCCACTGTACTTAT
CAATGGGCCTAATTTTGTTTCTCAAAGTCCACATGTATATCATGGTCAGGTCTACCCACCTGTACCCAGT
AATGAAGAGTTTGTAGTCACCAATGCCTTGGGACTTGTAGAATTCTATCGAACCTTTCAGGAAACTGCAG
ATAAGGACAGCAAATATTGTTTTCCCATTGAAAAAGCTCATGGACATTTCCTTTTTGTGGTTGGAGAAGA
TGATAAAAATCTCAACAGCAAAGTGCATGCTAATCAAGCCATAGCACAGCTGATGAAAAATGGAAAGAAG
AATTGGACTCTGCTGTCTTACCCTGGGGCAGGTCACCTGATTGAGCCTCCCTATACCCCACTGTGCCAAG
CCTCAAGGATGCCCATTTTGATCCCAAGCCTCAGCTGGGGAGGAGAGGTTATCCCCCATGCAGCTGCACA
GGAGCATTCTTGGAAGGAGATACAGAAATTTCTCAAGCAGCATCTCCTTCCAGATTTGAGCAGTCAGCTC
TGA

Translation (420 aa):
MAKLTAVPLSALVDEPVHIQVTGLAPFQVVCLQASLKDEKGNLFSSQAFYRASEVGEVDLEHDPSLGGDY
MGVHPMGLFWSLKPEKLLGRLIKRDVMNSPYQIHIKACHPYFPLQDIVVSPPLDSLTLERWYVAPGVKRI
QVKESRIRGALFLPPGEGPFPGVIDLFGGAGGLMEFRASLLASRGFATLALAYWNYDDLPSRLEKVDLEY
FEEGVEFLLRHPKVLGPGVGILSVCIGAEIGLSMAINLKQIRATVLINGPNFVSQSPHVYHGQVYPPVPS
NEEFVVTNALGLVEFYRTFQETADKDSKYCFPIEKAHGHFLFVVGEDDKNLNSKVHANQAIAQLMKNGKK
NWTLLSYPGAGHLIEPPYTPLCQASRMPILIPSLSWGGEVIPHAAAQEHSWKEIQKFLKQHLLPDLSSQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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