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Report for CCDS18069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18069.1 Public Mus musculus 4 Dctn3 23 108 98 CCDS HistoryNCBI Gene:53598Re-query CCDS DB by CCDS ID:18069.1Re-query CCDS DB by GeneID:53598See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030158.10 ENSMUSP00000030158.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030158.10Link to Ensembl Protein Viewer:ENSMUSP00000030158.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030158Re-query CCDS DB by Protein ID:ENSMUSP00000030158
Original member Current member NCBI NM_016890.4 NP_058586.3 Accepted alive Link to Nucleotide Sequence:NM_016890.4Link to Protein Sequence:NP_058586.3Re-query CCDS DB by Nucleotide ID:NM_016890Re-query CCDS DB by Protein ID:NP_058586Link to BLAST:NP_058586.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058586.3 186 Q9Z0Y1 186 100% 0 0

Chromosomal Locations for CCDS 18069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41715170 41715259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41715396 41715455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41716396 41716454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41717357 41717440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41719837 41719923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41720783 41720867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41723035 41723130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (561 nt):
ATGGCGGCTCTGACCGATGTGCAGCGGCTACAGTCTCGAGTGGAGGAGCTGGAGCGCTGGGTGTACGGGC
CGGGCGGGACCCGAGGCTCCAGGAAGGTGGCTGACGGTCTGGTCAAGGTGCAGGTGGCTTTAGGGAACAT
TGCCAGTAAGAGGGAGAGGGTGAAGATTCTCTACAAAAAGATTGAAGACCTGATTAAATACCTGGATCCT
GAGTACATTGATCGCATTGCCATACCTGAGGCCTCGAAGTTGCAGTTCATCTTAGCAGAGGAGCAGTTCA
TCCTCTCCCAGGTGGCACTCCTGGAACAAGTGAACGCCCTGGTGCCTGTGCTGGACAGCGCTTCTATCAA
AGCTGTTCCTGAGCATGCTGCCCGCCTGCAGCGCCTGGCGCAGATCCACATCCAGCAGCAGGACCAGTGT
GTGGCGATCACTGAAGAGTCTAAGGCTCTCCTGGAAGGGTATAACAAGACTACAATGCTTCTCTCCAAGC
AGTTTGTGCAGTGGGATGAGTTACTCTGCCAGCTAGAGGCTGCCAAGCAAGTGAAGCCAGCAGAGGAATG
A

Translation (186 aa):
MAALTDVQRLQSRVEELERWVYGPGGTRGSRKVADGLVKVQVALGNIASKRERVKILYKKIEDLIKYLDP
EYIDRIAIPEASKLQFILAEEQFILSQVALLEQVNALVPVLDSASIKAVPEHAARLQRLAQIHIQQQDQC
VAITEESKALLEGYNKTTMLLSKQFVQWDELLCQLEAAKQVKPAEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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