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Report for CCDS18066.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18066.1 Public Mus musculus 4 Dnai1 23 108 98 CCDS HistoryNCBI Gene:68922Re-query CCDS DB by CCDS ID:18066.1Re-query CCDS DB by GeneID:68922See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18066.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102963.9 ENSMUSP00000100028.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102963.9Link to Ensembl Protein Viewer:ENSMUSP00000100028.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000102963Re-query CCDS DB by Protein ID:ENSMUSP00000100028
Original member Current member NCBI NM_175138.4 NP_780347.2 Accepted alive Link to Nucleotide Sequence:NM_175138.4Link to Protein Sequence:NP_780347.2Re-query CCDS DB by Nucleotide ID:NM_175138Re-query CCDS DB by Protein ID:NP_780347Link to BLAST:NP_780347.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780347.2 701 Q8C0M8 701 100% 0 0

Chromosomal Locations for CCDS 18066.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 41569992 41570018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41596244 41596276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41597579 41597677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41597859 41597939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41602518 41602644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41602866 41603002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41603223 41603342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41604219 41604278 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41605696 41605830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41610205 41610289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41614230 41614347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41614650 41614693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41625104 41625351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41629792 41629881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41629997 41630084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41630597 41630676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41632140 41632288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41632389 41632488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41634962 41635147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41637873 41637971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2106 nt):
ATGCCCTCGAAACAGATTCGTAAGCAGAGCATCAGTGTAACCAGAGGAGCCAGGAGACGAGATGAAGATT
CAGGGACTGATGTGGGAGAAGGAACTGATGAATGGTCCCAATCCAAAGCCACCGTGCGACCCCCTGACCA
GCTGGAGCTGACCGATGCGGAGTTAAAGGAGGAGTTCACTCGGATCCTGACAGCCAACAACCCACATGCA
CCCCAGAATATTGTCAGGTACAGCTTCAAAGAGGGCACATATAAACTTATTGGTTTTGTGAACCAAATGG
CGGTTCACTTCAGCCAGGTGGGGAACCTGATACCCAAAGACTCAGATGAAGGCCGTCGCCAGCACTACCG
TGATGAGATGGTGGCAGGTTCACAGGAGTCTATCAAGGTGGTGACTTCAGAAGCAGAAAACCTTGAAGAA
GAGGAAGAACCCAAAGAAGGAGAAGGAGAAGCAGAAGCAGAAGCAGAAGCCGGGAGCCAAACGGACATCC
CTGCTGCAGCTGAGACAACTGAAAAGGTGATTGAAGAAGAGCTGATGGCTCCTGTGCAGCCCAAGGAACG
GAAGCTCACGAACCAGTTTAACTTCAGTGAGAGAGCATCCCAGACCTTCAACAACCCCCTCCGGGATCGA
GAGTGTCAGATGGAGCCTCCACCGAGGACGAACTTTTCAGCCACAGCCAATCAGTGGGAAATCTATGATG
CCTATGTAGATGAGCTCGAGAAACAGGAAAAGACCAAAGAGAAGGAGAAGGCAAAGACTCCAGTGGCTAA
GAAAACAGAGAAGATGGCCATGAGGAAACTGACATCTATGGAGTCCCAGAGTGATGATATCACCAAAGTG
ACCCAAGCTGCTAAAATCGTGGAGCGAATGGTCAACCAAAATACGTATGATGATGTTGCTCAAGATTTTA
AGTACTATGAGGATACTGCTGATGAATACAGGGACCAGGAGGGTACGCTGCTGCCTCTCTGGAAGTTTCA
AAATGACAAAGCCAAGCGCCTGGCAGTCACCGCCCTCTGCTGGAATCCAAAGTACAAGGATCTTTTTGCA
GTGGGACACGGCTCCTATGACTTCATGAAACAGAGCCGTGGCATGCTGCTGCTCTACAGCATGAAGAACC
CTAGCTTTCCCGAGTACATGTTCAGCAGTGAGAGTGGCATCATGTGTCTGGACGTGCACGTGGACCACCC
GTACCTGGTGGTCGTGGGCTACTATGATGGCAACGTGGCCATCTACAACCTCAAGAAGCCCCACTCGCAG
CCCTGCTTCCGCAGCACCTCCAAGTCTGGCAAGCACACGGACCCTGTATGGCAGGTCAAGTGGCAGAAGG
ATGACATGGACCACAACCTCAACTTCTTTTCTGTGTCGTCCGATGGCAGGATAGTGTCATGGACCCTCGT
CAAGAGCGAGCTGGTTCACATCGACATTATCAAGCTGAAGACTGAAGGCAGCACTACAGAAATCCCCGAG
GGGCTGCAGTTGCACACTGTAGGCTGTGGCACTGCCTTTGACTTCCACAAAGAGATCGACTACATGTTCC
TGGTGGGCACAGAAGAGGGAAAAATCTACAAGTGCTCCAAATCCTACTCCAGCCAGTTCTTGGACACCTA
TGATGCTCACAACATGGCAGTAGACGCTGTGCTATGGAACCCATACCACACCAAGGTCTTCATGTCCTGC
AGCTCTGACTGGACAGTGAAGATCTGGGACCACACCATCAAGACCCCCATGTTCATTTATGATCTGAACT
CAGCCGTGGGTGACGTGGCCTGGGCACCGTACTCTTCCACTGTGTTTGCAGCAGTCACCACGGACGGGAA
GGCCCATGTGTTTGACTTAGCGGTCAACAAGTATGAAGCTATCTGCAACCAGCCTGTGGTAGCCAAGAAG
AAGAACAAGATCACCCACGTGCAGTTCAATCCCATCCACCCCATCATAATCGTGGGCGACGACCGTGGCC
ACATCATCTGTCTCAAGCTCTCTCCCAACTTGCGAAAGATGCCAAAGGAGAAGAAGGGGCAGGAAGTGCA
GAAGGGGCCAGCTGTGGAGATCGCAAAATTGGACAAACTGCTAAACCTCGTGAGGGAAGTAAAAACCAAA
ACCTGA

Translation (701 aa):
MPSKQIRKQSISVTRGARRRDEDSGTDVGEGTDEWSQSKATVRPPDQLELTDAELKEEFTRILTANNPHA
PQNIVRYSFKEGTYKLIGFVNQMAVHFSQVGNLIPKDSDEGRRQHYRDEMVAGSQESIKVVTSEAENLEE
EEEPKEGEGEAEAEAEAGSQTDIPAAAETTEKVIEEELMAPVQPKERKLTNQFNFSERASQTFNNPLRDR
ECQMEPPPRTNFSATANQWEIYDAYVDELEKQEKTKEKEKAKTPVAKKTEKMAMRKLTSMESQSDDITKV
TQAAKIVERMVNQNTYDDVAQDFKYYEDTADEYRDQEGTLLPLWKFQNDKAKRLAVTALCWNPKYKDLFA
VGHGSYDFMKQSRGMLLLYSMKNPSFPEYMFSSESGIMCLDVHVDHPYLVVVGYYDGNVAIYNLKKPHSQ
PCFRSTSKSGKHTDPVWQVKWQKDDMDHNLNFFSVSSDGRIVSWTLVKSELVHIDIIKLKTEGSTTEIPE
GLQLHTVGCGTAFDFHKEIDYMFLVGTEEGKIYKCSKSYSSQFLDTYDAHNMAVDAVLWNPYHTKVFMSC
SSDWTVKIWDHTIKTPMFIYDLNSAVGDVAWAPYSSTVFAAVTTDGKAHVFDLAVNKYEAICNQPVVAKK
KNKITHVQFNPIHPIIIVGDDRGHIICLKLSPNLRKMPKEKKGQEVQKGPAVEIAKLDKLLNLVREVKTK
T


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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