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Report for CCDS18020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18020.1 Public Mus musculus 4 Gabrr2 23 108 98 CCDS HistoryNCBI Gene:14409Re-query CCDS DB by CCDS ID:18020.1Re-query CCDS DB by GeneID:14409See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18020.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024035.8 ENSMUSP00000024035.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024035.8Link to Ensembl Protein Viewer:ENSMUSP00000024035.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000024035Re-query CCDS DB by Protein ID:ENSMUSP00000024035
Original member NCBI NM_008076.3 NP_032102.2 Updated not alive Link to Nucleotide Sequence:NM_008076.3Link to Protein Sequence:NP_032102.2Re-query CCDS DB by Nucleotide ID:NM_008076Re-query CCDS DB by Protein ID:NP_032102
Current member NCBI NM_008076.4 NP_032102.2 Accepted alive Link to Nucleotide Sequence:NM_008076.4Link to Protein Sequence:NP_032102.2Re-query CCDS DB by Nucleotide ID:NM_008076Re-query CCDS DB by Protein ID:NP_032102Link to BLAST:NP_032102.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032102.2 490 P56476-2 490 100% 0 0

Chromosomal Locations for CCDS 18020.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 33063179 33063366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33071350 33071456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33077455 33077522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33081329 33081552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33082279 33082361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33082548 33082688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33084355 33084507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33085546 33085742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 33095274 33095585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1473 nt):
ATGGTTAAGCCAGGGGGCATCTTGCCCATTAAAAGTCCCTGCACAGCTGCCTGTTGCATCATAGACATGT
GCAGAATGCCTTATTTGATGAGACTCGCTTTGGTCTTGTTTTGCCTGATGGCTCTCGTGGAGAGCAGAAA
GCCCAGGAGGAAGAGATGGACAGGGCTTCTGGAAACATCCAAGCCAAGCCATTTGTATAAAAAGAACCTT
GATGTGACCAAGATGCGGCCAGGAAAGCCTCGGCCTCTGCTCAGGGTAGAGGACCACGACTTCACCATGA
GGCCAGCCTTTGGAGGCCCCGCCATCCCTGTAGGTGTGGACGTGCAGGTGGAGAGTCTGGACAGCATCTC
CGAGGTGGACATGGACTTCACCATGACCCTATACCTGAGGCATTACTGGAGGGACGAGAGGCTGGCCTTC
CCCAGCAGCAGCAACAAGAGCATGACCTTTGATGGCCGGCTGGTGAAGAAGATCTGGGTTCCTGATGTCT
TCTTTGTGCACTCCAAACGCTCCTTCATCCACGACACCACCACCGACAACATCATGCTGCGAGTGTTCCC
CGATGGCCATGTGCTATACAGCATGAGGATTACGGTCACTGCCATGTGCAACATGGACTTCAGCCACTTT
CCCCTGGATTCCCAGACCTGCTCTTTGGAGCTGGAGAGCTATGCGTACACAGATGAAGATCTGATGCTGT
ACTGGAAGAACGGGGACGAGTCCCTGAAGACAGACGAGAAGATCTCCTTGTCCCAGTTTCTGATCCAGAA
GTTTCACACGACTTCCAGACTGGCCTTCTACAGCAGCACTGGCTGGTACAACCGTCTGTACATCAACTTC
ACTCTGCGTCGTCACATCTTCTTCTTCTTGCTCCAAACCTACTTCCCTGCCACCCTCATGGTCATGCTGT
CCTGGGTGTCCTTCTGGATCGACCACAGAGCCGTGCCCGCCAGAGTCTCACTGGGCATCATGACGGTGCT
GACCATGTCGACCATCATCACGGGTGTGAACGCCTCCATGCCCCGAGTGTCCTACATCCGGGCCGTGGAC
ATCTACCTCTGGGTCAGCTTTGTGTTCGTCTTCCTCTCCGTGCTGGAGTACGCAGCTGTCAACTACCTGA
CCACACTGCAGGAGCAGAAGGAACGGAAGTTCCGGGAGAAGCTTCCATGCATGTGTGGAATGCTTCATTC
AAGGACCATGATGCTGGATGGAAGCTACAGTGAATCTGAGGCCAACAGCCTGGCTGGCTACCCAAGAAGC
CACATTCTGCCAGAAGAAGAAAGGCCAGATAACATCGTGGTTCATTTGGCCCTCAACAGTGAATTGACCT
CCTCCAGAAAGAAAGGCCTTCTGAAAGGCCAAATGGGTCTCTACATCTTCCAGAACACCCATGCCATTGA
CAAATACTCCAGGTTGATATTTCCTGCCTTCTACATAGTTTTCAACCTAATTTATTGGTCAGTGTTTTCC
TAG

Translation (490 aa):
MVKPGGILPIKSPCTAACCIIDMCRMPYLMRLALVLFCLMALVESRKPRRKRWTGLLETSKPSHLYKKNL
DVTKMRPGKPRPLLRVEDHDFTMRPAFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRHYWRDERLAF
PSSSNKSMTFDGRLVKKIWVPDVFFVHSKRSFIHDTTTDNIMLRVFPDGHVLYSMRITVTAMCNMDFSHF
PLDSQTCSLELESYAYTDEDLMLYWKNGDESLKTDEKISLSQFLIQKFHTTSRLAFYSSTGWYNRLYINF
TLRRHIFFFLLQTYFPATLMVMLSWVSFWIDHRAVPARVSLGIMTVLTMSTIITGVNASMPRVSYIRAVD
IYLWVSFVFVFLSVLEYAAVNYLTTLQEQKERKFREKLPCMCGMLHSRTMMLDGSYSESEANSLAGYPRS
HILPEEERPDNIVVHLALNSELTSSRKKGLLKGQMGLYIFQNTHAIDKYSRLIFPAFYIVFNLIYWSVFS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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