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Report for CCDS17985.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17985.1 Public Mus musculus 4 Decr1 23 108 98 CCDS HistoryNCBI Gene:67460Re-query CCDS DB by CCDS ID:17985.1Re-query CCDS DB by GeneID:67460See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17985.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029877.8 ENSMUSP00000029877.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029877.8Link to Ensembl Protein Viewer:ENSMUSP00000029877.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029877Re-query CCDS DB by Protein ID:ENSMUSP00000029877
Original member Current member NCBI NM_026172.4 NP_080448.1 Accepted alive Link to Nucleotide Sequence:NM_026172.4Link to Protein Sequence:NP_080448.1Re-query CCDS DB by Nucleotide ID:NM_026172Re-query CCDS DB by Protein ID:NP_080448Link to BLAST:NP_080448.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080448.1 335 Q9CQ62 335 100% 0 0

Chromosomal Locations for CCDS 17985.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 15919035 15919094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15919194 15919256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15919832 15919978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15922485 15922557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15924254 15924353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15929727 15929874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15930914 15931000 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15931125 15931182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15932893 15933095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 15945283 15945351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1008 nt):
ATGGCGCTGCTGGGCCGTGCGTTCTTTGCTGGGGTGTCCCGCCTCCCCTGCGATCCGGGTCCTCAGAGGT
TTTTCAGCTTTGGAACAAAAACACTGTATCAAAGCAAAGATGCTCCACAGTCTAAATTCTTCCAGCCCGT
TTTAAAGCCTATGCTACCACCTGATGCTTTTCAAGGAAAAGTGGCTTTCATTACTGGAGGAGGGACTGGC
CTTGGCAAGGCAATGACAACTTTCTTGTCTACCCTGGGTGCCCAGTGTGTGATAGCCAGCAGAAATATTG
ATGTTTTGAAAGCGACTGCAGAAGAGATTTCTTCTAAAACTGGAAACAAGGTTCATGCGATTCGGTGTGA
TGTTCGAGATCCTGATATGGTACATAACACAGTGCTGGAACTGATCAAAGTTGCAGGGCATCCGGATGTG
GTGATAAACAACGCGGCAGGGAACTTCATTTCCCCCAGTGAGAGACTGACTCCCAATGGCTGGAAGACCA
TAACTGACATAGTTCTCAATGGCACAGCCTATGTGACACTAGAAATTGGAAAGCAGCTAATTAAAGCACA
GAAAGGAGCTGCGTTTCTTGCCATCACTACCATCTATGCTGAGAGTGGATCAGGCTTTGTAATGCCAAGT
TCTTCAGCCAAATCAGGCGTGGAAGCCATGAATAAGTCACTTGCAGCTGAATGGGGTAGATATGGAATGC
GTTTCAACATAATTCAGCCAGGACCTATCAAAACCAAAGGAGCCTTTAGCCGTTTGGACCCGACTGGAAG
ATTTGAGAAGGAGATGATTGACAGAATCCCCTGTGGTCGTCTGGGAACTATGGAGGAACTTGCAAATCTG
GCCACTTTCCTATGCAGTGATTATGCCTCTTGGATTAATGGAGCAGTCATTAGATTTGACGGTGGAGAGG
AAGTATTTCTGTCAGGTGAATTCAACTCTCTAAAGAAGGTCACCAAGGAGGAGTGGGATATAATCGAAGG
GCTCATCAGGAAGACAAAAGGCTCCTAA

Translation (335 aa):
MALLGRAFFAGVSRLPCDPGPQRFFSFGTKTLYQSKDAPQSKFFQPVLKPMLPPDAFQGKVAFITGGGTG
LGKAMTTFLSTLGAQCVIASRNIDVLKATAEEISSKTGNKVHAIRCDVRDPDMVHNTVLELIKVAGHPDV
VINNAAGNFISPSERLTPNGWKTITDIVLNGTAYVTLEIGKQLIKAQKGAAFLAITTIYAESGSGFVMPS
SSAKSGVEAMNKSLAAEWGRYGMRFNIIQPGPIKTKGAFSRLDPTGRFEKEMIDRIPCGRLGTMEELANL
ATFLCSDYASWINGAVIRFDGGEEVFLSGEFNSLKKVTKEEWDIIEGLIRKTKGS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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