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Report for CCDS17978.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17978.1 Public Mus musculus 4 Runx1t1 23 108 98 CCDS HistoryNCBI Gene:12395Re-query CCDS DB by CCDS ID:17978.1Re-query CCDS DB by GeneID:12395See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17978.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098256.3 ENSMUSP00000095856.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098256.3Link to Ensembl Protein Viewer:ENSMUSP00000095856.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000098256Re-query CCDS DB by Protein ID:ENSMUSP00000095856
Original member Current member NCBI NM_009822.3 NP_033952.1 Accepted alive Link to Nucleotide Sequence:NM_009822.3Link to Protein Sequence:NP_033952.1Re-query CCDS DB by Nucleotide ID:NM_009822Re-query CCDS DB by Protein ID:NP_033952Link to BLAST:NP_033952.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033952.1 577 Q61909 577 100% 0 0

Chromosomal Locations for CCDS 17978.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 13785135 13785141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13835633 13835770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13837760 13838001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13841798 13841887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13846776 13846957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13859811 13860061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13865201 13865286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13865831 13866032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13875477 13875545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13881050 13881240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 13889612 13889887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1734 nt):
ATGCCTGATCGTACCGAGAAGCACTCCACAATGCCAGACTCACCTGTGGATGTGAAGACGCAGTCTAGGC
TGACTCCCCCAGCAATGCCACCTCCTCCAACCACTCAAGGAGCTCCAAGAACCAGCTCATTTACGCCAAC
GACATTAACGAATGGCACCAGCCATTCACCCACGGCCTTGAATGGCGCTCCCTCACCGCCTAATGGCTTT
AGCAACGGGCCTTCTTCTTCCTCTTCCTCTTCTCTGGCTAATCAGCAGCTGCCCCCAGCCTGTGGTGCTA
GGCAACTCAGCAAGCTGAAACGATTTCTTACTACCCTGCAGCAGTTTGGCAATGACATTTCACCAGAGAT
TGGAGAAAGAGTTCGCACCCTTGTACTGGGACTGGTGAACTCTACTTTGACAATTGAAGAATTTCATTCC
AAACTGCAAGAAGCTACTAACTTCCCACTGAGACCTTTTGTCATCCCGTTTTTGAAGGCCAACCTGCCCC
TGCTCCAGCGTGAACTCCTCCACTGCGCAAGGCTAGCCAAACAGAACCCTGCCCAGTACCTCGCTCAGCA
CGAACAGCTGCTTCTGGATGCCAGCACCACCTCCCCTGTCGACTCCTCAGAGCTGCTTCTCGACGTGAAC
GAAAACGGGAAGAGGCGAACTCCAGACAGAACCAAAGAAAATGGCTTTGACAGAGAGCCTTTGCACTCAG
AACATCCAAGCAAGCGACCATGCACTATTAGCCCAGGCCAGCGGTACAGTCCAAATAATGGCTTATCCTA
CCAGCCAAATGGCCTGCCTCACCCCACCCCACCTCCACCTCAGCATTACCGATTGGATGATATGGCCATT
GCCCACCACTACAGGGACTCCTATCGACACCCCAGCCACAGGGACCTCAGGGACAGAAATAGACCTATGG
GGTTACATGGCACACGTCAAGAAGAAATGATTGACCACAGACTAACAGACAGAGAATGGGCAGAAGAGTG
GAAACATCTCGATCATCTGTTAAACTGCATCATGGACATGGTGGAGAAGACAAGACGATCCCTCACTGTA
CTAAGACGATGTCAGGAAGCGGACCGGGAAGAACTGAATTACTGGATACGGCGGTACAGTGATGCTGAGG
ACTTAAAAAAGGGTGGCAGCAGTAGCAGCAGCCACTCCAGGCAGCAGAGTCCTGTCAATCCAGACCCAGT
CGCATTAGATGCACATCGGGAATTCCTTCACAGGCCTGCGTCTGGATACGTGCCAGAGGAGATCTGGAAG
AAAGCTGAGGAAGCTGTGAATGAGGTGAAGCGACAGGCAATGACGGAGCTGCAAAAAGCCGTGTCTGAGG
CAGAGAGGAAAGCCCATGACATGATCACCACGGAGCGAGCCAAGATGGAACGCACGGTGGCTGAAGCGAA
GAGGCAGGCAGCAGAAGATGCTCTAGCAGTCATCAACCAGCAGGAAGACTCCAGTGAGAGTTGCTGGAAC
TGTGGCCGGAAAGCAAGTGAGACGTGCAGCGGCTGTAACACGGCCCGATACTGTGGCTCTTTTTGCCAGC
ATAAAGACTGGGAGAAGCATCACCACATCTGTGGACAGACCCTGCAGGCCCCACAGCAGGGAGACACGCC
CGCTGTCAGCTCCTCAGTCACACCCAGCAGTGGGGCTGGGAGCCCAATGGACACACCACCAGCAGCCACT
CCGAGGTCTACCACCCCGGGAACCCCCTCTACCATAGAGACGACGCCTCGCTAG

Translation (577 aa):
MPDRTEKHSTMPDSPVDVKTQSRLTPPAMPPPPTTQGAPRTSSFTPTTLTNGTSHSPTALNGAPSPPNGF
SNGPSSSSSSSLANQQLPPACGARQLSKLKRFLTTLQQFGNDISPEIGERVRTLVLGLVNSTLTIEEFHS
KLQEATNFPLRPFVIPFLKANLPLLQRELLHCARLAKQNPAQYLAQHEQLLLDASTTSPVDSSELLLDVN
ENGKRRTPDRTKENGFDREPLHSEHPSKRPCTISPGQRYSPNNGLSYQPNGLPHPTPPPPQHYRLDDMAI
AHHYRDSYRHPSHRDLRDRNRPMGLHGTRQEEMIDHRLTDREWAEEWKHLDHLLNCIMDMVEKTRRSLTV
LRRCQEADREELNYWIRRYSDAEDLKKGGSSSSSHSRQQSPVNPDPVALDAHREFLHRPASGYVPEEIWK
KAEEAVNEVKRQAMTELQKAVSEAERKAHDMITTERAKMERTVAEAKRQAAEDALAVINQQEDSSESCWN
CGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAPQQGDTPAVSSSVTPSSGAGSPMDTPPAAT
PRSTTPGTPSTIETTPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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