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Report for CCDS17930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17930.1 Public Mus musculus 3 Negr1 23 108 98 CCDS HistoryNCBI Gene:320840Re-query CCDS DB by CCDS ID:17930.1Re-query CCDS DB by GeneID:320840See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17930.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074015.10 ENSMUSP00000073664.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074015.10Link to Ensembl Protein Viewer:ENSMUSP00000073664.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074015Re-query CCDS DB by Protein ID:ENSMUSP00000073664
Original member Current member NCBI NM_001039094.3 NP_001034183.1 Accepted alive Link to Nucleotide Sequence:NM_001039094.3Link to Protein Sequence:NP_001034183.1Re-query CCDS DB by Nucleotide ID:NM_001039094Re-query CCDS DB by Protein ID:NP_001034183Link to BLAST:NP_001034183.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034183.1 348 Q80Z24 348 100% 0 0

Chromosomal Locations for CCDS 17930.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 156562195 156562352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 156859437 156859669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157016182 157016307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157069166 157069297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157146212 157146332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157160586 157160737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157312786 157312910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1047 nt):
ATGGTGCTCCTGGCGCAGGGCGCTTGTTGCTCGAACCAGTGGCTGGCGGCGGTGCTTCTGAGCCTGTGCT
CTTGCCTCCCGGCCGGGCAGAGCGTGGACTTCCCTTGGGCGGCCGTGGACAACATGCTGGTGAGGAAAGG
TGACACAGCGGTGCTCAGGTGTTACTTGGAAGATGGAGCATCAAAGGGTGCCTGGCTCAACAGGTCAAGT
ATCATTTTTGCTGGAGGTGACAAGTGGTCAGTGGACCCTCGAGTTTCCATTTCCACATTGAATAAAAGAG
ACTACAGCCTCCAGATACAGAATGTTGATGTAACAGATGATGGCCCGTACACCTGTTCTGTGCAGACCCA
ACACACACCACGGACAATGCAGGTTCATCTCACTGTGCAAGTCCCACCGAAAATATACGACATCTCAAAT
GACATGACCATCAATGAAGGAACCAATGTCACCCTTACTTGTTTGGCCACTGGGAAGCCAGAGCCTGTCA
TTTCCTGGAGGCATATCTCCCCATCAGCAAAACCATTTGAAAATGGACAATATTTGGACATTTATGGAAT
TACAAGGGACCAGGCTGGGGAGTATGAATGCAGTGCAGAAAACGATGTGTCGTTCCCAGACGTGAAGAAA
GTGAGAGTGATCGTGAACTTTGCGCCTACAATTCAGGAAATTAAATCTGGCACTGTGACCCCTGGACGCA
GTGGACTGATACGATGCGAGGGTGCAGGTGTGCCGCCGCCGGCCTTCGAGTGGTACAAAGGAGAGAAGAG
GCTCTTCAATGGCCAACAAGGAATTATCATTCAGAATTTTAGCACAAGATCCATCCTCACAGTGACCAAT
GTGACGCAGGAGCACTTCGGCAACTATACTTGTGTGGCTGCCAACAAGTTGGGTACAACCAACGCGAGCC
TGCCCCTCAACCCTCCAAGTACAGCCCAGTATGGAATTACTGGGAGTGCCTGCGACCTCTTCTCCTGCTG
GAGCCTTGCGTTGACACTATCTTCTGTCATCAGTATATTCTACCTGAAGAATGCTATCCTTCAATGA

Translation (348 aa):
MVLLAQGACCSNQWLAAVLLSLCSCLPAGQSVDFPWAAVDNMLVRKGDTAVLRCYLEDGASKGAWLNRSS
IIFAGGDKWSVDPRVSISTLNKRDYSLQIQNVDVTDDGPYTCSVQTQHTPRTMQVHLTVQVPPKIYDISN
DMTINEGTNVTLTCLATGKPEPVISWRHISPSAKPFENGQYLDIYGITRDQAGEYECSAENDVSFPDVKK
VRVIVNFAPTIQEIKSGTVTPGRSGLIRCEGAGVPPPAFEWYKGEKRLFNGQQGIIIQNFSTRSILTVTN
VTQEHFGNYTCVAANKLGTTNASLPLNPPSTAQYGITGSACDLFSCWSLALTLSSVISIFYLKNAILQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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