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Report for CCDS17928.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17928.1 Public Mus musculus 3 Tnni3k 23 108 98 CCDS HistoryNCBI Gene:435766Re-query CCDS DB by CCDS ID:17928.1Re-query CCDS DB by GeneID:435766See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17928.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064076.5 ENSMUSP00000070561.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064076.5Link to Ensembl Protein Viewer:ENSMUSP00000070561.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000064076Re-query CCDS DB by Protein ID:ENSMUSP00000070561
Original member Current member NCBI NM_177066.5 NP_796040.3 Accepted alive Link to Nucleotide Sequence:NM_177066.5Link to Protein Sequence:NP_796040.3Re-query CCDS DB by Nucleotide ID:NM_177066Re-query CCDS DB by Protein ID:NP_796040Link to BLAST:NP_796040.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796040.3 834 Q5GIG6-1 834 100% 0 0

Chromosomal Locations for CCDS 17928.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 154786727 154786803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154792773 154792852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154827481 154827650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154833646 154833705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154856521 154856630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154872093 154872225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154875132 154875184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154875491 154875543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154938751 154938855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154939583 154939777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154939874 154939931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154940025 154940117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154941032 154941088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154941608 154941694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154956940 154957089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154957690 154957784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154961773 154961877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154961951 154962095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154969208 154969343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 154979149 154979247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155030261 155030371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155037388 155037485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155038479 155038564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155054548 155054656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155055267 155055306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2505 nt):
ATGGGGAATTACAAATCCAGACCGACACAGACTTGTTCTGATGAATGGAAGAAGAAAGTTAGTGAATCTT
ATGCTATTATAATAGAAAGGCTGGAAGATGACCTGCAGATCAAAGAAAATGAATTTCAAGAACTAAGACA
CATCTTTGGCTCTGACGAAGCCTTCAGTGAAGTCAGTTTAAATTACCGCACAGAGCGTGGCCTGTCCCTA
CTGCACCTCTGCTGTGCCTGCGGTGGCAACAAGTCGCATATCCGTGCCCTTATGTTAAAAGGGCTCCGTC
CATCCAGACTGACAAGAAATGGGTTTCCAGCTCTGCACTTGGCTGTTTACAAGGATAGCCTGGAACTTAT
CACTTCACTGTTGCATAGCGGAGCAGATGTTCAGCAAGCGGGATATGGCGGCCTCACAGCCCTCCACATC
GCTGCAATAGCTGGGCACCCAGAGGCCGTGGAAGTGCTGCTGCAGCATGGAGCCAATGTGAACGTTCAAG
ATGCAGTCTTCTTCACCCCACTGCACATCGCAGCCTATTACGGGCACGAGCAGGTAACCAGTGTCCTTTT
GAAGTTTGGAGCTGATGTCAATGTAAGCGGTGAAGTTGGAGACAGGCCTCTGCACCTGGCCTCTGCAAAA
GGGTTCTTCAACATTGTGAAACTCCTGGTAGAAGGGAACAAAGCCGACGTGAACGCTCAGGACAATGAAG
ACCATGTCCCTCTGCACTTCTGTTCTCGATTTGGACACCACAATATAGTGAGCTACTTGCTCCAGAGTGA
CTTGGAGGTTCAGCCTCACGTCATTAACATCTATGGTGACACTCCTTTGCACCTGGCGTGCTACAATGGA
AATTTTGAAGTTGCCAAGGAAATTGTCCACGTAACAGGAACTGAAAGTCTGACTAAGGAAAACATCTTCA
GTGAGACAGCTTTTCACAGTGCTTGTACCTATGGCAAGAACATTGACCTGGTCAAATTCCTTCTTGATCA
GAATGCTGTGAACATTAACCATCGAGGAAGAGATGGGCACACAGGATTACACTCTGCTTGCTACCATGGC
CACATACGCCTGGTTCAGTTCCTACTGGATAATGGTGCAGATATGAATCTAGTTGCTTGTGATCCCAGCA
GGTCTAGTGGTGAAAAAGATGAGCAGACATGTTTGATGTGGGCTTATGAGAAAGGACATGATGCCATTGT
TACACTCCTGAAGCACTATAAGAGACCCCAGGATGAGCTGCCATGTAACGAATATTCTCAGCCTGGAGGA
GATGGCTCCTATGTGTCTGTCCCATCCCCCTTGGGGAAGATTAAAAGCATGACAAAAGAGAAGGCAGATG
TTCTCCTCCTGAGGGCTGAATTACCCTCCCGTTTCCATCTGCAGCTCTCGGAAATTGAATTCCATGAGAT
TATCGGCTCAGGTTCTTTTGGGAAAGTCTATAAAGGGCGATGCAGAAATAAAATAGTGGCAATCAAACGA
TACCGAGCCAACACCTACTGCTCCAAGTCAGACGTGGATATGTTTTGCCGAGAAGTGTCCATCCTCTGCC
AGCTCAATCACCCCTGCGTGGTTCAGTTTGTGGGTGCCTGCCTGGATGACCCCAGCCAGTTTGCCATTGT
CACACAATACATTTCAGGAGGCTCTCTGTTCTCCCTGCTTCATGAACAGAAGAGAATTCTTGACTTGCAG
TCTAAATTAATCATTGCAGTAGACGTTGCCAAGGGCATGGAGTACCTGCACAGCTTGACCCAGCCAATCA
TACACCGCGACCTGAACAGTCACAATATTCTTCTCTATGAGGACGGCCATGCTGTGGTGGCAGATTTTGG
AGAATCAAGATTTCTGCAGTCCCTGGATGAAGACAACATGACAAAGCAGCCAGGGAACCTGCGCTGGATG
GCCCCCGAGGTGTTCACACAGTGCACGCGCTACACCATCAAGGCTGATGTCTTCAGTTACGCCCTGTGTC
TGTGGGAGCTCCTCACTGGAGAAATTCCATTCGCTCATCTGAAGCCAGCCGCTGCAGCAGCAGATATGGC
GTACCACCACATCAGACCTCCCATCGGCTACTCCATCCCCAAGCCAATCTCATCTCTGCTGATGCGGGGC
TGGAATGCATGTCCCGAAGGAAGACCCGAGTTCTCTGAAGTCGTTAGGAAGCTGGAGGAGTGCCTGTGTA
ACGTGGAGCTCATGTCTCCTGCATCAAGTAACAGCAGTGGCTCTCTGTCACCTTCCTCTTCTTCTGATTG
CCTACTGAGCCGAGGAGGGCCTGGCCGGAGCCATGTGGCAGCTTTACGGAGTCGTTTTGAGTTGGAATAC
GCCCTAAATGCAAGGTCCTACACTGGGTGGCCTCAAAGTGTCGGGACACACACTAATCCAGGCCTGTCTT
TGGAGGAAATGAACAGAGGTGCCCAGTATTCAGCTGTTGACAAATATGGCTACGTGTCTGATCCCATGAG
CCCGATGCACCTCCACTCCCGCCGGAACAGTGGCAGCTTTGAGGACGGCAACTGA

Translation (834 aa):
MGNYKSRPTQTCSDEWKKKVSESYAIIIERLEDDLQIKENEFQELRHIFGSDEAFSEVSLNYRTERGLSL
LHLCCACGGNKSHIRALMLKGLRPSRLTRNGFPALHLAVYKDSLELITSLLHSGADVQQAGYGGLTALHI
AAIAGHPEAVEVLLQHGANVNVQDAVFFTPLHIAAYYGHEQVTSVLLKFGADVNVSGEVGDRPLHLASAK
GFFNIVKLLVEGNKADVNAQDNEDHVPLHFCSRFGHHNIVSYLLQSDLEVQPHVINIYGDTPLHLACYNG
NFEVAKEIVHVTGTESLTKENIFSETAFHSACTYGKNIDLVKFLLDQNAVNINHRGRDGHTGLHSACYHG
HIRLVQFLLDNGADMNLVACDPSRSSGEKDEQTCLMWAYEKGHDAIVTLLKHYKRPQDELPCNEYSQPGG
DGSYVSVPSPLGKIKSMTKEKADVLLLRAELPSRFHLQLSEIEFHEIIGSGSFGKVYKGRCRNKIVAIKR
YRANTYCSKSDVDMFCREVSILCQLNHPCVVQFVGACLDDPSQFAIVTQYISGGSLFSLLHEQKRILDLQ
SKLIIAVDVAKGMEYLHSLTQPIIHRDLNSHNILLYEDGHAVVADFGESRFLQSLDEDNMTKQPGNLRWM
APEVFTQCTRYTIKADVFSYALCLWELLTGEIPFAHLKPAAAAADMAYHHIRPPIGYSIPKPISSLLMRG
WNACPEGRPEFSEVVRKLEECLCNVELMSPASSNSSGSLSPSSSSDCLLSRGGPGRSHVAALRSRFELEY
ALNARSYTGWPQSVGTHTNPGLSLEEMNRGAQYSAVDKYGYVSDPMSPMHLHSRRNSGSFEDGN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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