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Report for CCDS17869.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17869.1 Public Mus musculus 3 Metap1 23 108 98 CCDS HistoryNCBI Gene:75624Re-query CCDS DB by CCDS ID:17869.1Re-query CCDS DB by GeneID:75624See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17869.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029804.12 ENSMUSP00000029804.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029804.12Link to Ensembl Protein Viewer:ENSMUSP00000029804.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000029804Re-query CCDS DB by Protein ID:ENSMUSP00000029804
Original member Current member NCBI NM_175224.4 NP_780433.1 Accepted alive Link to Nucleotide Sequence:NM_175224.4Link to Protein Sequence:NP_780433.1Re-query CCDS DB by Nucleotide ID:NM_175224Re-query CCDS DB by Protein ID:NP_780433Link to BLAST:NP_780433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780433.1 386 Q8BP48 386 100% 0 0

Chromosomal Locations for CCDS 17869.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 138460337 138460500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138462365 138462430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138466224 138466367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138468834 138468965 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138472151 138472289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138473904 138473987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138474987 138475078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138478870 138478930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138480688 138480800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138483067 138483118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 138489258 138489371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGGCGGCGGTGGAGACGCGGGTGTGCGAGACGGACGGCTGCAGCAGCGAGGCCAAGCTCCAGTGTCCCA
CCTGCATCAAGCTGGGCATCCAGGGCTCGTACTTCTGCTCGCAGGAATGCTTTAAAGGAAGCTGGGCCAC
TCACAAGTTACTACATAAGAAAGCAAAAGATGAAAAGGCAAAGCGAGAAGTGTGTTCCTGGACTGTAGAA
GGTGATGTCAACACTGACCCATGGGCAGGCTATCGGTACACTGGTAAACTCAGGCCACATTATCCACTGA
TGCCAACACGGCCAGTGCCCAGTTACATTCAGAGGCCGGACTATGCTGACCATCCCTTAGGAATGTCTGA
ATCGGAGCAGGCTCTTAAAGGTACCTCTCAGATTAAGTTACTCTCATCTGAAGATATAGAAGGGATGCGA
CTCGTGTGTAGGCTTGCCAGAGAAGTTTTGGACATTGCTGCTGGGATGATTAAAGCGGGTGTAACTACTG
AAGAGATCGACCACGCTGTACACTTAGCATGCATTGCAAGAAATTGCTATCCTTCTCCCCTGAATTACTA
TAACTTCCCAAAGTCTTGTTGTACCTCAGTGAATGAAGTCATCTGCCATGGGATTCCAGACAGGCGGCCT
TTGCAAGAAGGTGATATTGTTAATGTGGACATCACTCTTTATCGAAATGGTTACCATGGGGATCTAAATG
AGACCTTTTTCGTTGGCGATGTGGATGAAGGAGCACGGAAACTTGTTCAGACTACATATGAGTGCCTGAT
GCAAGCCATCGATGCAGTGAAGCCTGGTGTTCGATACAGAGAACTGGGAAACATCATTCAGAAACACGCC
CAAGCAAATGGATTCTCAGTTGTTCGAAGCTATTGTGGGCATGGGATCCACAAACTTTTCCATACAGCCC
CCAATGTCCCGCACTATGCCAAAAATAAAGCAGTTGGTGTGATGAAGTCGGGTCATGTGTTTACAATTGA
GCCAATGATTTGTGAAGGTGGATGGCAGGATGAGACTTGGCCAGATGGCTGGACTGCAGTGACGAGGGAC
GGGAAGCGATCTGCTCAGTTTGAGCACACCCTGCTGGTCACGGACACTGGCTGTGAAATTCTCACCCGGA
GACTCGATAGCTCTCGGCCTCATTTCATGTCCCAGTTTTAA

Translation (386 aa):
MAAVETRVCETDGCSSEAKLQCPTCIKLGIQGSYFCSQECFKGSWATHKLLHKKAKDEKAKREVCSWTVE
GDVNTDPWAGYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMR
LVCRLAREVLDIAAGMIKAGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVICHGIPDRRP
LQEGDIVNVDITLYRNGYHGDLNETFFVGDVDEGARKLVQTTYECLMQAIDAVKPGVRYRELGNIIQKHA
QANGFSVVRSYCGHGIHKLFHTAPNVPHYAKNKAVGVMKSGHVFTIEPMICEGGWQDETWPDGWTAVTRD
GKRSAQFEHTLLVTDTGCEILTRRLDSSRPHFMSQF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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