NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17860.1 Public Mus musculus 3 Ppp3ca 23 108 98 CCDS HistoryNCBI Gene:19055Re-query CCDS DB by CCDS ID:17860.1Re-query CCDS DB by GeneID:19055See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056758.8 ENSMUSP00000053101.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056758.8Link to Ensembl Protein Viewer:ENSMUSP00000053101.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000056758Re-query CCDS DB by Protein ID:ENSMUSP00000053101
Original member NCBI NM_008913.5 NP_032939.1 Updated not alive Link to Nucleotide Sequence:NM_008913.5Link to Protein Sequence:NP_032939.1Re-query CCDS DB by Nucleotide ID:NM_008913Re-query CCDS DB by Protein ID:NP_032939
Current member NCBI NM_008913.6 NP_032939.1 Accepted alive Link to Nucleotide Sequence:NM_008913.6Link to Protein Sequence:NP_032939.1Re-query CCDS DB by Nucleotide ID:NM_008913Re-query CCDS DB by Protein ID:NP_032939Link to BLAST:NP_032939.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032939.1 521 P63328-1 521 100% 0 0

Chromosomal Locations for CCDS 17860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 136670844 136670901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136797726 136797926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136868602 136868726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136876089 136876200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136877630 136877775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136881401 136881540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136887947 136888024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136890436 136890530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136903103 136903228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136905299 136905373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136921833 136921917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136928522 136928619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136932011 136932040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 136935029 136935225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGTCCGAGCCCAAGGCGATTGATCCCAAGTTGTCGACGACCGACAGGGTGGTGAAAGCCGTTCCATTTC
CACCAAGTCACCGGCTGACAGCAAAGGAAGTGTTTGATAATGATGGGAAACCTCGTGTGGATATCTTAAA
AGCACATCTCATGAAGGAGGGCAGGCTGGAAGAAAGTGTTGCATTGAGAATAATAACAGAGGGTGCTTCG
ATTCTCCGACAGGAAAAAAACTTGCTGGATATCGACGCACCAGTCACAGTTTGTGGGGACATCCATGGAC
AATTCTTTGACTTGATGAAGCTCTTTGAAGTGGGAGGATCTCCTGCCAACACTCGCTACCTCTTCTTAGG
GGACTATGTTGACAGAGGGTACTTCAGTATCGAATGTGTGCTGTATTTGTGGGCCTTGAAAATTCTTTAC
CCCAAAACACTGTTTTTACTTCGCGGAAACCATGAATGTAGGCACCTCACAGAGTATTTCACGTTTAAAC
AAGAATGTAAAATAAAGTATTCAGAACGCGTTTATGACGCCTGTATGGATGCCTTCGACTGCCTTCCCCT
GGCTGCGCTAATGAACCAGCAGTTCCTGTGTGTACACGGTGGTTTGTCTCCAGAGATTAACACTCTAGAT
GACATCAGAAAATTAGACCGATTCAAAGAACCACCTGCTTATGGGCCCATGTGTGACATCCTATGGTCAG
ACCCCCTGGAGGACTTTGGAAATGAGAAGACTCAGGAACATTTCACTCACAACACAGTCAGAGGCTGTTC
GTACTTCTACAGTTACCCAGCTGTGTGTGACTTCCTGCAGCACAATAATTTGTTGTCCATACTCCGCGCC
CACGAAGCCCAGGATGCAGGGTACCGCATGTACAGGAAAAGCCAAACAACAGGCTTCCCGTCTCTAATTA
CAATCTTCTCGGCACCAAATTACTTAGATGTGTACAATAACAAAGCTGCAGTGTTGAAGTACGAGAACAA
TGTGATGAACATCAGGCAGTTCAACTGCTCCCCGCATCCGTACTGGCTCCCAAATTTCATGGATGTTTTC
ACCTGGTCGCTGCCATTTGTTGGGGAGAAAGTGACTGAGATGCTGGTCAATGTTCTCAACATCTGCTCCG
ACGATGAACTGGGGTCAGAAGAAGATGGATTTGACGGAGCCACGGCCGCAGCCCGGAAGGAAGTCATCAG
AAACAAGATCCGAGCAATAGGCAAAATGGCCAGAGTGTTCTCAGTTCTCAGAGAAGAGAGTGAGAGTGTC
CTGACACTGAAGGGCCTGACCCCAACTGGCATGCTCCCCAGCGGAGTGCTCTCTGGCGGGAAACAGACTC
TGCAAAGCGCTACTGTTGAGGCTATTGAGGCTGATGAAGCCATCAAAGGATTTTCACCACAACATAAGAT
CACTAGCTTCGAGGAGGCCAAGGGCTTAGACCGAATTAACGAGAGGATGCCACCTCGCAGAGACGCCATG
CCCTCTGACGCCAACCTTAACTCCATCAACAAGGCTCTCGCCTCAGAGACTAACGGCACGGACAGCAATG
GCAGTAATAGCAGCAATATCCAGTGA

Translation (521 aa):
MSEPKAIDPKLSTTDRVVKAVPFPPSHRLTAKEVFDNDGKPRVDILKAHLMKEGRLEESVALRIITEGAS
ILRQEKNLLDIDAPVTVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILY
PKTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEINTLD
DIRKLDRFKEPPAYGPMCDILWSDPLEDFGNEKTQEHFTHNTVRGCSYFYSYPAVCDFLQHNNLLSILRA
HEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPYWLPNFMDVF
TWSLPFVGEKVTEMLVNVLNICSDDELGSEEDGFDGATAAARKEVIRNKIRAIGKMARVFSVLREESESV
LTLKGLTPTGMLPSGVLSGGKQTLQSATVEAIEADEAIKGFSPQHKITSFEEAKGLDRINERMPPRRDAM
PSDANLNSINKALASETNGTDSNGSNSSNIQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH