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Report for CCDS1781.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1781.1 Public Homo sapiens 2 YIPF4 24 110 108 CCDS HistoryNCBI Gene:84272Re-query CCDS DB by CCDS ID:1781.1Re-query CCDS DB by GeneID:84272See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1781.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238831.9 ENSP00000238831.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238831.9Link to Ensembl Protein Viewer:ENSP00000238831.3Re-query CCDS DB by Nucleotide ID:ENST00000238831Re-query CCDS DB by Protein ID:ENSP00000238831
Original member Current member NCBI NM_032312.4 NP_115688.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032312.4Link to Protein Sequence:NP_115688.1Re-query CCDS DB by Nucleotide ID:NM_032312Re-query CCDS DB by Protein ID:NP_115688Link to BLAST:NP_115688.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115688.1 244 Q9BSR8 244 100% 0 0

Chromosomal Locations for CCDS 1781.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 32278156 32278234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32290483 32290636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32292177 32292348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32298234 32298311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32301382 32301495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 32305489 32305626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (735 nt):
ATGCAGCCTCCGGGCCCGCCCCCGGCCTATGCCCCCACTAACGGGGACTTCACCTTTGTCTCCTCAGCAG
ACGCGGAAGATCTCAGTGGTTCAATAGCATCCCCAGATGTCAAATTAAATCTTGGTGGAGATTTTATCAA
AGAATCTACAGCTACTACATTTCTGAGACAAAGAGGTTATGGCTGGCTTCTGGAAGTTGAAGATGATGAT
CCTGAAGATAACAAGCCACTCTTGGAAGAATTGGACATTGATCTAAAGGATATTTACTACAAAATCCGAT
GTGTTTTGATGCCAATGCCATCACTTGGTTTTAATAGACAAGTGGTGAGAGACAATCCTGACTTTTGGGG
TCCTCTGGCTGTTGTTCTTTTCTTTTCCATGATATCATTATATGGACAGTTTAGGGTGGTCTCATGGATT
ATAACCATTTGGATATTTGGTTCACTAACAATTTTCTTACTGGCCAGAGTTCTTGGTGGAGAAGTTGCAT
ATGGCCAAGTCCTTGGAGTTATAGGATATTCATTACTTCCTCTCATTGTAATAGCCCCTGTACTTTTGGT
GGTTGGATCATTTGAAGTGGTGTCTACACTTATAAAACTGTTTGGTGTGTTTTGGGCTGCCTACAGTGCT
GCTTCATTGTTAGTGGGTGAAGAATTCAAGACCAAAAAGCCTCTTCTGATTTATCCAATCTTTTTATTAT
ACATTTATTTTTTGTCGTTATATACTGGTGTGTGA

Translation (244 aa):
MQPPGPPPAYAPTNGDFTFVSSADAEDLSGSIASPDVKLNLGGDFIKESTATTFLRQRGYGWLLEVEDDD
PEDNKPLLEELDIDLKDIYYKIRCVLMPMPSLGFNRQVVRDNPDFWGPLAVVLFFSMISLYGQFRVVSWI
ITIWIFGSLTIFLLARVLGGEVAYGQVLGVIGYSLLPLIVIAPVLLVVGSFEVVSTLIKLFGVFWAAYSA
ASLLVGEEFKTKKPLLIYPIFLLYIYFLSLYTGV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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