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Report for CCDS17807.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17807.1 Public Mus musculus 3 Arhgap29 23 108 98 CCDS HistoryNCBI Gene:214137Re-query CCDS DB by CCDS ID:17807.1Re-query CCDS DB by GeneID:214137See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17807.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037958.13 ENSMUSP00000044624.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037958.13Link to Ensembl Protein Viewer:ENSMUSP00000044624.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037958Re-query CCDS DB by Protein ID:ENSMUSP00000044624
Original member Current member NCBI NM_001356524.1 NP_001343453.1 Accepted alive Link to Nucleotide Sequence:NM_001356524.1Link to Protein Sequence:NP_001343453.1Re-query CCDS DB by Nucleotide ID:NM_001356524Re-query CCDS DB by Protein ID:NP_001343453Link to BLAST:NP_001343453.1
Original member Current member NCBI NM_172525.3 NP_766113.1 Accepted alive Link to Nucleotide Sequence:NM_172525.3Link to Protein Sequence:NP_766113.1Re-query CCDS DB by Nucleotide ID:NM_172525Re-query CCDS DB by Protein ID:NP_766113Link to BLAST:NP_766113.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001343453.1 1266 Q8CGF1-1 1266 100% 0 0
NP_766113.1 1266 Q8CGF1-1 1266 100% 0 0

Chromosomal Locations for CCDS 17807.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 121973911 121974115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121981815 121981949 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121988489 121988585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121988912 121988984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121990309 121990357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121990985 121991122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121991862 121991926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121992334 121992444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121992533 121992613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121992742 121992930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 121993580 121993717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122002542 122002702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122003209 122003348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122004245 122004349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122005655 122005753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122006776 122006915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122007544 122007732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122007954 122008091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122009826 122010058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122011250 122011580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122012065 122012173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122014101 122014975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3801 nt):
ATGATTGCTCACAAACAGAAAAAGGCAAAGAAAAAGCGTGTTTGGGCATCAGGCCAACCTTCTGCTGCTA
TTACAACTTCTGAAATGGGGCTCAAGTCCGTAAGTTCCAGCTCCAGTTTTGATCCGGAGTACATCAAGGA
GCTGGTGAATGATGTCAGGAAGTTCTCCCATATGTTGCTATATTTGAAAGAAGCTATTCTTTCAGACTGT
TTTAAAGAAGTCATTCATATCCGTCTGGATGAGCTTCTCCGTGTTTTAAAGTCGATATTGAGCAAGCATC
AGAACCTCAGCTCCGTAGATCTTCAGAGCGCTGCAGAGGTGCTCACTGCAAAAGTGAAAGCTGTGAACTT
TACAGAAGTTAATGAAGAAAACAAAAACGATATATTCCGAGAAGTCTTTTCCTCCATTGAAACATTGGCA
TTTACCTTTGGAAACATCCTCACAAACTTCCTTATGGGAGACGTAGGCAGTGACTCGATACTACGTCTAC
CTATTTCTCGAGAAAGTAAGTCTTTTGAAAACATTTCTGTGGACTCAGTGGACTTACCCCATGAAAAAGG
AAATTTTTCTCCTATAGAACTAGACAACTTGCTGTTAAAGAACACTGACTCTATAGAGCTGGCTTTGTCC
TATGCTAAAACATGGTCAAAATATACCAAGAATATAGTGTCGTGGGTTGAAAAAAAGCTCAACTTGGAAT
TGGAGTCCACTAGAAATATTGTAAAATTGGCAGAGGCAACTAGATCTAGCATTGGTATACAAGAGTTTAT
GCCACTGCAGTCTCTATTTACCAACGCTCTTCTCAGTGACATCCACAGCAGCCACCTTCTACAACAGACA
ATTGCAGCCCTCCAAGCCAATAAATTTGTGCAGCCTCTACTTGGGAGGAAGAATGAGATGGAGAAGCAAA
GGAAAGAAATAAAAGACCTTTGGAAGCAGCAACAGAATAAATTGCTCGAAACAGAGACAGCTCTCAAAAA
AGCAAAATTGTTGTGCATGCAGCGGCAAGATGAATACGAAAAGGCAAAATCGTCCATGTTTCGTGCAGAA
GAAGAGCAGCTAAGTTCAAGTGTTGGTTTGGCAAAAAATCTCAACAAACAACTGGAAAAAAGGCGGAGGT
TGGAAGAAGAGGCTCTTCAAAAAGTAGAAGAAGCAAACGAACACTACAAAGTCTGTGTAACAAATGTTGA
AGAAAGACGGAATGATCTAGAAAATACAAAGAGGGAAATTTTAACACAGCTTCGGACACTTGTTTTCCAG
TGTGACCTTACACTTAAAGCTGTAACAGTTAACCTCTTTCATATGCAGCAGCTACAGGCTGCATCCCTTG
CCAACAGTTTACAGTCCCTCTGTGACAGTGCCAAACTCTATGATCCAGGTCAGGAGTACAGTGAATTCGT
GAAGGCTACAAGCTCAAGTGAATTAGAAGAAAAGGTTGATGGGAATGTAAATAAACAAATGACCAACAGT
CCGCAGACATCTGGCTATGAACCTGCTGACTCCTTAGAGGATGTTGCCCGCCTTCCTGACAGCTGTCATA
AGCTTGAAGAGGACAGGTGCTCCAACAGTGCAGACATGACAGGTCCTTCTTTCGTAAGATCATGGAAGTT
CGGAATGTTTAGTGACTCAGAGAGCACTGGAGGAAGCAGTGAGTCTAGATCTCTGGATTCAGAGTCTATA
AGTCCAGGAGACTTTCATCGGAAACTTCCACGGACTCCATCCAGTGGAACCATGTCTTCTGCTGATGATC
TCGATGAGAGAGAGCCACCGTCCCCTTCAGAAGCTGGACCCAATTCCCTCGGAGCATTTAAGAAAACTTT
GATGTCAAAGGCAGCTCTCACTCACAAGTTTCGCAAGTTGAGATCCCCGACAAAGTGCAGGGATTGTGAC
GGCATCGTAATGTTCCCAGGCGTCGAGTGTGAAGAGTGTCTCCTTGTTTGTCATCGGAAGTGTCTGGAGA
ATTTAGTCATTATTTGTGGTCATCAAAAACTTCAGGGAAAAATGCACATATTTGGAGCAGAATTCATACA
AGTTGCAAAAAAGGAACCAGATGGCATCCCTTTTGTACTGAAAATATGTGCCTCAGAAATTGAAAATAGA
GCCTTGTGTCTCCAGGGAATTTATCGTGTTTGTGGAAACAAAATAAAAACTGAAAAACTGTGCCAAGCTT
TGGAAAATGGGATGCACTTAGTAGACATTTCAGAATTCAGTTCACATGACATCTGTGATGTCTTGAAATT
ATACCTGCGACAGCTTCCAGAACCATTTATTTTATTCAGATTGTACAAGGAATTTATAGACCTTGCAAAA
GAGATACAACATGTAAATGAAGAACAAGAGGCAAAAAAAGATAGCCCTGAAGACAAGAAACACCCACATG
TGAGCATAGAAGTCAACCGCATCCTTCTGAAGAGCAAAGACCTGCTGAGACAGCTGCCAGCGTCACATTT
CAACAGCCTCCATTACCTCATAGCACATCTGAGGCGAGTGGTGGATCATGCAGAAGAGAACAAGATGAAT
TCTAAGAACTTGGGGGTGATATTTGGACCAACTCTCATTAGGCCAAGGCCTACAACGGCTCCTGTCACCA
TCTCGTCCCTTGCTGAATATTCCAATCAGGCACGATTAGTAGAGTTCCTTATTACTTACTCACAGAAGAT
CTTCGATGGGTCCCTCCAGCCTCAAGCTGTTGTTATATCTAACACAGGTGCTGTGGCACCTCAGGTTGAT
CAAGGCTATCTTCCAAAACCTCTGTTATCACCAGATGAGAGAGACACAGATCATTCTATGAAACCACTCT
TTTTTTCTTCAAAGGAAGATATCCGTAGTTCAGATTGTGAGAGCAAAAGTTTTGAATTAACTACATCTTT
TGAAGAATCAGAACGCAGACAAAATGCATTGGGGAAATGTGACGCTCCTCTCCTCGACAACAAAGTACAT
TTGCTTTTTGACCAAGAGCATGAGTCAGCGTCCCAAAAGATGGAAGATGTCTGTAAAAGCCCCAAGCTGC
TGCTGCTGAAATCCAATAGGGCAGCAAACAGTGTGCAGAGACATACTCCAAGGACCAAGATGAGACCTGT
AAGCTTGCCTGTAGACCGGCTGCTTCTTCTTGCCAGTTCTCCTACTGAGAGAAGCAGCAGGGATGTAGGA
AACGTAGACTCAGACAAGTTTGGCAAGAACCCTGCCTTTGAAGGACTCCATAGAAAGGACAACTCAAATA
CTACTCGCTCCAAAGTTAATGGCTTTGACCAGCAAAATGTACAGAAATCCTGGGACACACAATATGTACG
GAACAATTTTACTGCCAAGACTACGATGATTGTTCCCAGTGCCTACCCTGAGAAGGGATTGACAGTAAAC
ACTGGGAATAACAGGGACCATCCCGGCAGTAAAGCACATGCAGAGCCAGCCAGGGCTGCAGGAGATGTGT
CAGAGCGCAGGTCCTCTGACTCCTGCCCCGCCACTGCTGTCAGAGCACCCAGAACACTGCAGCCCCAACA
CTGGACAACATTTTACAAACCACCTAATCCCACCTTCAGTGTCAGGGGGACTGAGGAGAAAACAGCATTA
CCCTCAATAGCTGTACCTCCTGTCCTGGTGCATGCTCCCCAGATCCATGTGACAAAATCAGACCCAGACT
CAGAGGCCACATTGGCCTGTCCTGTGCAGACAAGTGGTCAACCTAAAGAGAGCTCTGAGGAGCCTGCCCT
GCCTGAGGGGACTCCAACTTGCCAGAGACCACGACTAAAACGAATGCAGCAATTTGAAGACCTTGAAGAT
GAAATCCCACAGTTTGTGTAG

Translation (1266 aa):
MIAHKQKKAKKKRVWASGQPSAAITTSEMGLKSVSSSSSFDPEYIKELVNDVRKFSHMLLYLKEAILSDC
FKEVIHIRLDELLRVLKSILSKHQNLSSVDLQSAAEVLTAKVKAVNFTEVNEENKNDIFREVFSSIETLA
FTFGNILTNFLMGDVGSDSILRLPISRESKSFENISVDSVDLPHEKGNFSPIELDNLLLKNTDSIELALS
YAKTWSKYTKNIVSWVEKKLNLELESTRNIVKLAEATRSSIGIQEFMPLQSLFTNALLSDIHSSHLLQQT
IAALQANKFVQPLLGRKNEMEKQRKEIKDLWKQQQNKLLETETALKKAKLLCMQRQDEYEKAKSSMFRAE
EEQLSSSVGLAKNLNKQLEKRRRLEEEALQKVEEANEHYKVCVTNVEERRNDLENTKREILTQLRTLVFQ
CDLTLKAVTVNLFHMQQLQAASLANSLQSLCDSAKLYDPGQEYSEFVKATSSSELEEKVDGNVNKQMTNS
PQTSGYEPADSLEDVARLPDSCHKLEEDRCSNSADMTGPSFVRSWKFGMFSDSESTGGSSESRSLDSESI
SPGDFHRKLPRTPSSGTMSSADDLDEREPPSPSEAGPNSLGAFKKTLMSKAALTHKFRKLRSPTKCRDCD
GIVMFPGVECEECLLVCHRKCLENLVIICGHQKLQGKMHIFGAEFIQVAKKEPDGIPFVLKICASEIENR
ALCLQGIYRVCGNKIKTEKLCQALENGMHLVDISEFSSHDICDVLKLYLRQLPEPFILFRLYKEFIDLAK
EIQHVNEEQEAKKDSPEDKKHPHVSIEVNRILLKSKDLLRQLPASHFNSLHYLIAHLRRVVDHAEENKMN
SKNLGVIFGPTLIRPRPTTAPVTISSLAEYSNQARLVEFLITYSQKIFDGSLQPQAVVISNTGAVAPQVD
QGYLPKPLLSPDERDTDHSMKPLFFSSKEDIRSSDCESKSFELTTSFEESERRQNALGKCDAPLLDNKVH
LLFDQEHESASQKMEDVCKSPKLLLLKSNRAANSVQRHTPRTKMRPVSLPVDRLLLLASSPTERSSRDVG
NVDSDKFGKNPAFEGLHRKDNSNTTRSKVNGFDQQNVQKSWDTQYVRNNFTAKTTMIVPSAYPEKGLTVN
TGNNRDHPGSKAHAEPARAAGDVSERRSSDSCPATAVRAPRTLQPQHWTTFYKPPNPTFSVRGTEEKTAL
PSIAVPPVLVHAPQIHVTKSDPDSEATLACPVQTSGQPKESSEEPALPEGTPTCQRPRLKRMQQFEDLED
EIPQFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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