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Report for CCDS17787.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17787.1 Public Mus musculus 3 Dbt 23 108 98 CCDS HistoryNCBI Gene:13171Re-query CCDS DB by CCDS ID:17787.1Re-query CCDS DB by GeneID:13171See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17787.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000000349.10 ENSMUSP00000000349.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000000349.10Link to Ensembl Protein Viewer:ENSMUSP00000000349.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000000349Re-query CCDS DB by Protein ID:ENSMUSP00000000349
Original member NCBI NM_010022.4 NP_034152.2 Updated not alive Link to Nucleotide Sequence:NM_010022.4Link to Protein Sequence:NP_034152.2Re-query CCDS DB by Nucleotide ID:NM_010022Re-query CCDS DB by Protein ID:NP_034152
Current member NCBI NM_010022.5 NP_034152.2 Accepted alive Link to Nucleotide Sequence:NM_010022.5Link to Protein Sequence:NP_034152.2Re-query CCDS DB by Nucleotide ID:NM_010022Re-query CCDS DB by Protein ID:NP_034152Link to BLAST:NP_034152.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034152.2 482 P53395 482 100% 0 0

Chromosomal Locations for CCDS 17787.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 116513141 116513191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116520237 116520360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116523352 116523427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116533255 116533436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116534745 116534866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116539089 116539305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116539655 116539821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116543768 116543845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116545982 116546173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116546294 116546365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 116548033 116548200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGCTGCAGCGCGTGTACTGAGGACCTGGAGCCAGAACGCTGTCAGACTGACCTGTGTTCGCTATTTTC
AGACATTTAATAGCGCCCGTGTTTTGAAGCCAAAATGTGTGTGCTCTGTGGGTTATCCATTGTTCAAGTA
CAGTCAGCCACGTCACTCCCTGAGAACAGCGGCCGTGCTCCAGGGACAGGTTGTTCAGTTCAAACTCTCC
GACATCGGAGAAGGAATTCGAGAAGTAACTATTAAAGAATGGTATGTAAAAGAAGGAGATACGGTGTCTC
AGTTTGACAGCATCTGTGAAGTTCAAAGTGACAAGGCCTCTGTCACCATCACCAGCCGTTACGATGGCGT
CATTAAGAGGCTCTATTACAATCTAGATGATATCGCTTATGTGGGGAAACCACTGATCGACATTGAGACA
GAAGCTTTAAAGGATTCAGAGGAAGATGTTGTTGAAACCCCCGCTGTGTCCCATGATGAGCACACTCACC
AAGAGATAAAAGGCCAGAAAACACTAGCAACGCCTGCAGTGCGTCGGCTGGCAATGGAAAACAATATTAA
GCTGAGTGAAGTTGTTGGCTCAGGAAAAGATGGCAGAATACTTAAAGAAGATATTCTCAGCTTTTTGGAA
AAGCAGACAGGAGCCATACTGCCTCCCTCACCAAAATCTGAAATCACACCACCTCCACCACAGCCCAAAG
ACAGGACCTTTCCCACGCCGATAGCAAAGCCTCCAGTGTTCACAGGCAAAGACCGAACAGAGCCAGTGAC
AGGCTTCCAGAAGGCAATGGTGAAGACCATGTCTGCAGCCCTGAAGATTCCCCACTTCGGGTATTGTGAT
GAGATTGACCTTACTCAACTGGTTAAGCTTCGAGAAGAGCTGAAACCTGTTGCTTTGGCGCGTGGAATCA
AACTCTCCTTCATGCCCTTCTTCTTAAAGGCTGCTTCTCTGGGACTCCTGCAGTTTCCTATCCTCAATGC
CTCCGTGGACGAGAACTGCCAGAACATCACCTACAAGGCTTCTCACAACATTGGGATAGCAATGGACACT
GAGCTGGGGTTAATTGTCCCCAATGTGAAGAACGTTCAGGTCCGCTCTGTATTTGAGATCGCCATGGAAC
TGAACCGCCTCCAGAAACTGGGCTCTTCCGGTCAGCTCGGTACCACCGACCTTACAGGAGGGACATTTAC
TCTTTCCAACATTGGATCAATCGGTGGAACCTATGCCAAGCCAGTGATATTGCCACCGGAAGTAGCCATT
GGTGCCCTGGGAGCGATTAAGGCTCTTCCCCGATTTGACCAGAAAGGAGACGTTTATAAAGCACAGATAA
TGAATGTGAGCTGGTCAGCGGATCACAGGGTCATCGATGGGGCCACCATGTCACGCTTCTCTAATTTGTG
GAAATCCTACTTAGAAAACCCAGCGTTTATGCTGCTGGATCTGAAATAA

Translation (482 aa):
MAAARVLRTWSQNAVRLTCVRYFQTFNSARVLKPKCVCSVGYPLFKYSQPRHSLRTAAVLQGQVVQFKLS
DIGEGIREVTIKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKRLYYNLDDIAYVGKPLIDIET
EALKDSEEDVVETPAVSHDEHTHQEIKGQKTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILSFLE
KQTGAILPPSPKSEITPPPPQPKDRTFPTPIAKPPVFTGKDRTEPVTGFQKAMVKTMSAALKIPHFGYCD
EIDLTQLVKLREELKPVALARGIKLSFMPFFLKAASLGLLQFPILNASVDENCQNITYKASHNIGIAMDT
ELGLIVPNVKNVQVRSVFEIAMELNRLQKLGSSGQLGTTDLTGGTFTLSNIGSIGGTYAKPVILPPEVAI
GALGAIKALPRFDQKGDVYKAQIMNVSWSADHRVIDGATMSRFSNLWKSYLENPAFMLLDLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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