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Report for CCDS17756.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17756.1 Public Mus musculus 3 Sort1 23 108 98 CCDS HistoryNCBI Gene:20661Re-query CCDS DB by CCDS ID:17756.1Re-query CCDS DB by GeneID:20661See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17756.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102632.6 ENSMUSP00000099692.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102632.6Link to Ensembl Protein Viewer:ENSMUSP00000099692.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102632Re-query CCDS DB by Protein ID:ENSMUSP00000099692
Original member Current member NCBI NM_019972.3 NP_064356.2 Accepted alive Link to Nucleotide Sequence:NM_019972.3Link to Protein Sequence:NP_064356.2Re-query CCDS DB by Nucleotide ID:NM_019972Re-query CCDS DB by Protein ID:NP_064356Link to BLAST:NP_064356.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064356.2 825 Q6PHU5-1 825 100% 0 0

Chromosomal Locations for CCDS 17756.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 108284141 108284440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108308477 108308536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108310144 108310217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108324596 108324698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108325649 108325813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108328008 108328081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108331911 108331960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108334566 108334696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108337791 108337935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108338811 108338966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108340599 108340705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108344854 108344956 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108345714 108345882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108346657 108346847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108348568 108348757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108351672 108351788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108354133 108354241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108356231 108356337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108356577 108356688 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 108357229 108357243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2478 nt):
ATGGAGCGGCCCCGGGGAGCTGCGGACGGCCTTTTGCGCTGGCCCCTCGGCCTCCTCCTGCTCCTTCAAC
TGCTGCCTCCTGCCGCCGTCGGCCAGGACCGGCTGGACGCGCCGCCGCCGCCCGCGCCTCCTCTGCTGCG
CTGGGCCGGTCCGGTCGGGGTGAGCTGGGGGCTGCGCGCCGCCGCGCCCGGGGGCCCCGTCCCCCGCGCT
GGCCGTTGGCGCCGCGGCGCGCCCGCCGAGGACCAAGACTGCGGCCGCCTCCCGGACTTCATCGCCAAGC
TGACCAACAATACGCACCAGCATGTCTTTGATGACCTCAGTGGCTCAGTGTCCTTGTCCTGGGTTGGAGA
CAGCACTGGGGTTATTCTCGTCCTGACCACTTTCCAAGTGCCTCTGGTAATTGTGAGCTTTGGACAGTCC
AAGTTGTATCGAAGTGAGGATTATGGAAAGAACTTTAAGGATATTACAAATCTCATCAATAACACCTTCA
TTCGGACGGAATTTGGCATGGCTATTGGTCCTGAGAACTCTGGAAAGGTGATACTAACAGCGGAGGTGTC
CGGGGGAAGCCGAGGCGGAAGAGTGTTCAGGTCATCAGACTTTGCCAAGAACTTTGTGCAAACAGATCTC
CCCTTTCATCCTCTGACGCAGATGATGTACAGCCCTCAGAATTCTGATTACCTGTTAGCTCTCAGCACCG
AAAATGGCCTGTGGGTGTCCAAGAATTTTGGGGAAAAATGGGAAGAAATCCACAAAGCAGTATGTTTGGC
CAAATGGGGACCAAACAACATCATCTTCTTTACCACCCATGTGAATGGCTCCTGCAAAGCTGATCTTGGT
GCCCTGGAATTATGGAGAACATCCGACTTGGGAAAAACCTTCAAAACCATTGGTGTGAAAATCTACTCCT
TTGGTCTTGGGGGCCGTTTCCTTTTTGCCTCTGTGATGGCTGATAAGGACACAACAAGAAGGATCCATGT
GTCAACAGACCAGGGGGACACATGGAGCATGGCACAACTTCCTTCTGTGGGACAGGAACAGTTCTACTCC
ATCCTGGCAGCCAATGAGGACATGGTCTTCATGCATGTAGATGAACCTGGAGATACCGGGTTTGGCACCA
TCTTTACCTCTGATGATCGAGGCATTGTCTACTCCAAGTCTCTGGACAGACATCTCTATACCACCACAGG
CGGGGAGACGGACTTTACCAACGTGACTTCCCTCCGTGGGGTCTATATAACAAGCACGCTCTCAGAAGAT
AACTCTATTCAGAGCATGATCACTTTTGACCAGGGAGGACGGTGGGAGCACCTGCGGAAGCCGGAGAACA
GCAAGTGCGACGCTACCGCAAAGAACAAGAACGAGTGCAGCCTTCATATCCATGCTTCTTATAGCATCTC
CCAGAAGCTAAACGTTCCAATGGCCCCACTTTCCGAGCCCAATGCTGTGGGCATAGTCATCGCTCACGGT
AGTGTGGGAGATGCCATCTCGGTGATGGTCCCAGATGTGTACATCTCAGATGATGGGGGTTACTCCTGGG
CGAAGATGCTAGAAGGACCACATTACTATACCATCCTGGACTCTGGAGGCATCATTGTGGCCATTGAGCA
CAGCAACCGTCCTATCAATGTGATTAAGTTCTCCACAGATGAAGGCCAGTGCTGGCAGAGCTATGTGTTC
ACACAGGAGCCCATCTACTTCACTGGGCTTGCTTCCGAGCCTGGAGCCAGGTCCATGAACATCAGCATCT
GGGGATTCACAGAGTCTTTCATTACCCGCCAGTGGGTCTCCTACACAGTCGATTTCAAAGACATCCTTGA
GCGGAATTGTGAAGAGGATGACTATACCACGTGGCTGGCACACTCCACAGACCCTGGAGATTACAAAGAC
GGCTGCATTTTGGGCTATAAAGAACAGTTCCTACGGCTACGGAAGTCATCCGTCTGTCAGAATGGTCGAG
ACTATGTTGTGGCCAAGCAGCCATCCGTCTGTCCGTGTTCCCTGGAGGACTTCCTCTGTGACTTTGGCTA
CTTCCGTCCGGAGAACGCCTCAGAGTGCGTGGAGCAGCCTGAACTGAAGGGGCATGAGTTAGAGTTCTGT
CTGTACGGCAAGGAGGAGCACCTGACAACAAATGGGTACCGGAAAATCCCAGGAGACAAATGCCAAGGTG
GGATGAATCCCGCCAGAGAAGTAAAAGACTTGAAAAAGAAATGCACAAGCAACTTCTTGAACCCCACAAA
GCAGAATTCCAAGTCAAATTCTGTCCCTATTATCCTGGCCATCGTGGGACTGATGCTTGTCACAGTCGTA
GCAGGAGTCCTCATTGTGAAGAAATATGTCTGTGGCGGAAGGTTCCTGGTGCACCGGTACTCGGTGCTAC
AGCAGCACGCAGAGGCTGACGGCGTAGAGGCTTTGGATTCAACCTCCCACGCTAAAAGCGGATATCACGA
CGACTCAGATGAGGACCTCCTGGAATAG

Translation (825 aa):
MERPRGAADGLLRWPLGLLLLLQLLPPAAVGQDRLDAPPPPAPPLLRWAGPVGVSWGLRAAAPGGPVPRA
GRWRRGAPAEDQDCGRLPDFIAKLTNNTHQHVFDDLSGSVSLSWVGDSTGVILVLTTFQVPLVIVSFGQS
KLYRSEDYGKNFKDITNLINNTFIRTEFGMAIGPENSGKVILTAEVSGGSRGGRVFRSSDFAKNFVQTDL
PFHPLTQMMYSPQNSDYLLALSTENGLWVSKNFGEKWEEIHKAVCLAKWGPNNIIFFTTHVNGSCKADLG
ALELWRTSDLGKTFKTIGVKIYSFGLGGRFLFASVMADKDTTRRIHVSTDQGDTWSMAQLPSVGQEQFYS
ILAANEDMVFMHVDEPGDTGFGTIFTSDDRGIVYSKSLDRHLYTTTGGETDFTNVTSLRGVYITSTLSED
NSIQSMITFDQGGRWEHLRKPENSKCDATAKNKNECSLHIHASYSISQKLNVPMAPLSEPNAVGIVIAHG
SVGDAISVMVPDVYISDDGGYSWAKMLEGPHYYTILDSGGIIVAIEHSNRPINVIKFSTDEGQCWQSYVF
TQEPIYFTGLASEPGARSMNISIWGFTESFITRQWVSYTVDFKDILERNCEEDDYTTWLAHSTDPGDYKD
GCILGYKEQFLRLRKSSVCQNGRDYVVAKQPSVCPCSLEDFLCDFGYFRPENASECVEQPELKGHELEFC
LYGKEEHLTTNGYRKIPGDKCQGGMNPAREVKDLKKKCTSNFLNPTKQNSKSNSVPIILAIVGLMLVTVV
AGVLIVKKYVCGGRFLVHRYSVLQQHAEADGVEALDSTSHAKSGYHDDSDEDLLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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