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Report for CCDS1774.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1774.1 Public Homo sapiens 2 EHD3 24 110 108 CCDS HistoryNCBI Gene:30845Re-query CCDS DB by CCDS ID:1774.1Re-query CCDS DB by GeneID:30845See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1774.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000322054.10 ENSP00000327116.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000322054.10Link to Ensembl Protein Viewer:ENSP00000327116.5Re-query CCDS DB by Nucleotide ID:ENST00000322054Re-query CCDS DB by Protein ID:ENSP00000327116
Original member Current member NCBI NM_014600.3 NP_055415.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014600.3Link to Protein Sequence:NP_055415.1Re-query CCDS DB by Nucleotide ID:NM_014600Re-query CCDS DB by Protein ID:NP_055415Link to BLAST:NP_055415.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055415.1 535 Q9NZN3-1 535 100% 0 0

Chromosomal Locations for CCDS 1774.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 31234622 31234848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31244274 31244450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31249371 31249468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31260510 31260922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31261549 31261713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 31266177 31266704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGTTCAGCTGGCTGGGTACGGACGACCGCCGGAGGAAGGACCCCGAGGTTTTCCAGACGGTGAGTGAGG
GGCTCAAGAAACTCTACAAGAGCAAGCTGCTGCCCTTGGAAGAGCATTACCGCTTCCACGAGTTCCACTC
GCCCGCCCTGGAGGATGCCGACTTCGACAACAAGCCCATGGTTCTGCTGGTGGGCCAGTACTCCACTGGG
AAGACCACCTTCATCAGGTACCTGCTGGAACAGGACTTCCCAGGCATGAGGATTGGGCCTGAGCCCACCA
CAGACTCCTTCATTGCGGTGATGCAGGGAGACATGGAGGGGATCATCCCTGGGAACGCCCTGGTGGTGGA
TCCCAAGAAACCCTTCAGGAAACTCAACGCCTTTGGCAACGCCTTCTTGAACAGGTTCGTGTGTGCCCAG
CTACCTAACCCTGTGCTGGAGAGCATCAGCGTCATCGACACACCAGGGATCCTCTCTGGGGAGAAGCAGA
GGATCAGCCGGGGGTATGACTTTGCAGCTGTCCTTGAGTGGTTTGCCGAGCGGGTTGACCGCATCATTCT
GCTCTTCGATGCCCACAAACTGGACATCTCTGATGAGTTCTCAGAAGTCATCAAAGCCCTCAAGAACCAC
GAGGACAAGATGCGAGTGGTGCTGAACAAAGCTGACCAGATCGAGACGCAGCAGCTGATGCGGGTGTACG
GGGCCCTCATGTGGTCCTTGGGGAAGATCGTGAACACCCCAGAGGTGATCCGGGTCTACATCGGCTCCTT
CTGGTCCCACCCCCTCCTCATCCCTGACAACCGGAAGCTCTTTGAGGCTGAGGAACAGGACCTATTCAGG
GACATCCAGAGTCTGCCCCGAAATGCTGCCCTGCGCAAGCTCAACGACCTCATCAAAAGGGCCAGGCTGG
CCAAGGTCCACGCCTACATCATCAGCTCTCTGAAGAAGGAGATGCCCTCGGTGTTCGGGAAGGACAACAA
GAAGAAGGAGCTGGTCAACAACCTGGCCGAGATCTATGGCCGGATCGAGCGGGAGCACCAGATCTCACCT
GGGGACTTCCCCAATCTGAAGAGGATGCAGGACCAGCTGCAGGCCCAGGACTTTAGCAAGTTCCAGCCGC
TGAAGAGCAAGCTGCTGGAGGTAGTGGACGACATGCTGGCCCATGACATTGCCCAGCTCATGGTGCTAGT
GCGCCAGGAGGAGTCACAGCGGCCCATCCAGATGGTGAAGGGCGGAGCGTTCGAGGGCACCCTGCACGGC
CCCTTTGGGCATGGCTATGGGGAGGGGGCTGGAGAAGGTATCGATGATGCTGAGTGGGTGGTGGCCAGGG
ACAAGCCCATGTACGACGAGATCTTCTACACCCTGTCACCGGTGGATGGCAAGATCACAGGCGCTAATGC
CAAGAAGGAGATGGTGCGCTCCAAGCTGCCCAACAGTGTGCTGGGCAAGATCTGGAAGCTGGCCGACATT
GACAAGGATGGCATGCTGGACGACGACGAGTTTGCACTGGCCAACCACCTCATCAAAGTCAAGCTGGAGG
GGCACGAGCTGCCCAACGAGCTGCCTGCCCACCTCCTGCCCCCGTCCAAGAGGAAAGTTGCCGAGTGA

Translation (535 aa):
MFSWLGTDDRRRKDPEVFQTVSEGLKKLYKSKLLPLEEHYRFHEFHSPALEDADFDNKPMVLLVGQYSTG
KTTFIRYLLEQDFPGMRIGPEPTTDSFIAVMQGDMEGIIPGNALVVDPKKPFRKLNAFGNAFLNRFVCAQ
LPNPVLESISVIDTPGILSGEKQRISRGYDFAAVLEWFAERVDRIILLFDAHKLDISDEFSEVIKALKNH
EDKMRVVLNKADQIETQQLMRVYGALMWSLGKIVNTPEVIRVYIGSFWSHPLLIPDNRKLFEAEEQDLFR
DIQSLPRNAALRKLNDLIKRARLAKVHAYIISSLKKEMPSVFGKDNKKKELVNNLAEIYGRIEREHQISP
GDFPNLKRMQDQLQAQDFSKFQPLKSKLLEVVDDMLAHDIAQLMVLVRQEESQRPIQMVKGGAFEGTLHG
PFGHGYGEGAGEGIDDAEWVVARDKPMYDEIFYTLSPVDGKITGANAKKEMVRSKLPNSVLGKIWKLADI
DKDGMLDDDEFALANHLIKVKLEGHELPNELPAHLLPPSKRKVAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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