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Report for CCDS17733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17733.1 Public Mus musculus 3 Kcna2 23 108 98 CCDS HistoryNCBI Gene:16490Re-query CCDS DB by CCDS ID:17733.1Re-query CCDS DB by GeneID:16490See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038695.5 ENSMUSP00000041702.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038695.5Link to Ensembl Protein Viewer:ENSMUSP00000041702.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000038695Re-query CCDS DB by Protein ID:ENSMUSP00000041702
Original member Current member EBI ENSMUST00000196403.1 ENSMUSP00000142873.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196403.1Link to Ensembl Protein Viewer:ENSMUSP00000142873.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196403Re-query CCDS DB by Protein ID:ENSMUSP00000142873
Original member Current member EBI ENSMUST00000197470.4 ENSMUSP00000143798.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000197470.4Link to Ensembl Protein Viewer:ENSMUSP00000143798.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000197470Re-query CCDS DB by Protein ID:ENSMUSP00000143798
Original member Current member NCBI NM_008417.5 NP_032443.3 Accepted alive Link to Nucleotide Sequence:NM_008417.5Link to Protein Sequence:NP_032443.3Re-query CCDS DB by Nucleotide ID:NM_008417Re-query CCDS DB by Protein ID:NP_032443Link to BLAST:NP_032443.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032443.3 499 P63141 499 100% 0 0

Chromosomal Locations for CCDS 17733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 107104105 107105604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGACAGTGGCTACCGGAGACCCAGTGGACGAGGCTGCTGCCCTCCCTGGGCACCCACAAGACACCTATG
ACCCAGAGGCAGACCATGAATGCTGTGAGAGAGTGGTCATCAACATCTCAGGCCTGCGGTTCGAAACTCA
GCTAAAGACCTTAGCCCAGTTCCCAGAGACCCTCTTAGGGGACCCCAAGAAACGGATGAGGTACTTCGAT
CCCCTCCGAAATGAGTACTTTTTTGATCGCAACCGCCCTAGCTTTGATGCCATTTTGTACTACTATCAGT
CTGGGGGCAGGTTGAGGCGACCTGTGAACGTGCCCTTAGATATCTTCTCGGAAGAAATCCGGTTTTATGA
GCTAGGAGAAGAAGCAATGGAGATGTTTCGGGAGGATGAAGGCTACATCAAGGAAGAAGAGCGTCCTCTG
CCTGAAAATGAGTTTCAGAGACAGGTGTGGCTTCTCTTTGAATACCCTGAGAGCTCAGGGCCTGCCAGGA
TTATAGCCATTGTATCTGTGATGGTCATTCTGATCTCCATCGTCAGCTTCTGTCTGGAAACCTTGCCCAT
CTTCCGGGATGAGAATGAGGACATGCATGGTGGCGGGGTGACCTTCCACACCTATTCCAACAGCACCATC
GGGTACCAGCAGTCCACCTCCTTCACCGACCCTTTCTTCATTGTAGAGACTCTCTGCATCATCTGGTTCT
CCTTTGAGTTTCTGGTTAGATTCTTTGCCTGTCCCAGCAAAGCTGGCTTCTTCACCAACATCATGAACAT
CATTGACATTGTGGCTATCATCCCTTACTTTATCACCCTGGGGACAGAGTTAGCTGAGAAGCCAGAGGAC
GCCCAGCAAGGCCAGCAGGCCATGTCACTGGCCATTCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGA
TTTTCAAGTTGTCCAGACACTCCAAAGGTCTACAGATTCTAGGTCAGACCCTCAAAGCTAGCATGAGGGA
ATTGGGCCTCCTGATATTCTTCCTCTTCATTGGGGTCATCCTCTTCTCTAGTGCTGTCTATTTTGCAGAA
GCTGATGAGAGAGATTCCCAGTTCCCCAGCATCCCGGATGCTTTCTGGTGGGCAGTCGTCTCCATGACAA
CTGTAGGCTATGGAGACATGGTTCCAACTACCATTGGGGGGAAGATAGTGGGTTCTCTGTGTGCAATTGC
AGGTGTGTTAACCATTGCCTTACCAGTCCCTGTCATAGTGTCTAATTTCAACTACTTCTACCACCGGGAG
ACAGAGGGAGAGGAGCAGGCCCAGTACTTGCAAGTGACAAGCTGTCCAAAGATCCCGTCCTCCCCTGACC
TAAAGAAAAGTAGAAGTGCCTCTACCATAAGTAAGTCTGATTACATGGAGATACAGGAGGGAGTTAACAA
CAGCAATGAGGACTTTAGAGAGGAGAACTTAAAAACAGCCAACTGTACCTTGGCTAACACAAACTATGTG
AATATTACCAAAATGTTAACTGATGTCTGA

Translation (499 aa):
MTVATGDPVDEAAALPGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFD
PLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPL
PENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSNSTI
GYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPED
AQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE
ADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE
TEGEEQAQYLQVTSCPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANCTLANTNYV
NITKMLTDV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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