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Report for CCDS17727.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17727.1 Public Mus musculus 3 Lrif1 23 108 98 CCDS HistoryNCBI Gene:321000Re-query CCDS DB by CCDS ID:17727.1Re-query CCDS DB by GeneID:321000See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17727.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000106736.2 ENSMUSP00000102347.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106736.2Link to Ensembl Protein Viewer:ENSMUSP00000102347.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000106736Re-query CCDS DB by Protein ID:ENSMUSP00000102347
Original member Current member NCBI NM_001286685.1 NP_001273614.1 Accepted alive Link to Nucleotide Sequence:NM_001286685.1Link to Protein Sequence:NP_001273614.1Re-query CCDS DB by Nucleotide ID:NM_001286685Re-query CCDS DB by Protein ID:NP_001273614Link to BLAST:NP_001273614.1
Original member Current member NCBI NM_028081.2 NP_082357.2 Accepted alive Link to Nucleotide Sequence:NM_028081.2Link to Protein Sequence:NP_082357.2Re-query CCDS DB by Nucleotide ID:NM_028081Re-query CCDS DB by Protein ID:NP_082357Link to BLAST:NP_082357.2

Chromosomal Locations for CCDS 17727.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 106734370 106734639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 106735405 106735848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCATCAATAGTAAAAAAGGAAATTCAAGAAAAAGGAAATAACAAGAAATATTCTCAAGGAAGCCATA
CTAATATTAAGGCATCATGTCTGAAGAATGATGCTGAATTTAAAAAGCTATTTGGTCTCACTAAAGATTT
GAGAGTATGTCTTACTCGAATTCCTGACCATCTGAGCTCTGGAAAAAGTTTTAATTCCTTTAACAGTTTG
ATGAAAAGTAGTTCTTACAAAGATGCAAACATTGTGGTGAAGAAAGAAGAAAAAAAACAGAGTTTCTCTA
AGAAAAGAAAAGCGGAAACCATGAAGATGGGTAACACAAAAAAGATAAAAATTGAGAATGCTGATGACAC
GGTCATGAGCATCATGAATGGAACTGATGTTGCTAGTTCCCAACCTCTCAGTAGTATTTTACCAACATCA
GACATATCACAACATAACATTGTCACAAGCCATAGTACAACCAGGGAAGACAAGAGAACTGAGGCAGAAC
ACTGTTCTCATGAGAAGCAGGAAAAAGGCACATTAAGTTCAAGCACATCTTTTGAACAAAGTACTTTTTT
AAATAAAAACTTTATGGAAGATATTTTTCCAGTGACACCACCAGAACTAGAAGAAACCATCAGAGATGAA
AAAATAAGAAGACTTAAGCAAATTTTAAGAGAAAAAGAAGCAGCTCTTGAAGAATTGCGTAAGAAGATGT
ACCAAAAACAATAA

Translation (237 aa):
MASIVKKEIQEKGNNKKYSQGSHTNIKASCLKNDAEFKKLFGLTKDLRVCLTRIPDHLSSGKSFNSFNSL
MKSSSYKDANIVVKKEEKKQSFSKKRKAETMKMGNTKKIKIENADDTVMSIMNGTDVASSQPLSSILPTS
DISQHNIVTSHSTTREDKRTEAEHCSHEKQEKGTLSSSTSFEQSTFLNKNFMEDIFPVTPPELEETIRDE
KIRRLKQILREKEAALEELRKKMYQKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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