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Report for CCDS17691.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17691.1 Public Mus musculus 3 Bcas2 23 108 98 CCDS HistoryNCBI Gene:68183Re-query CCDS DB by CCDS ID:17691.1Re-query CCDS DB by GeneID:68183See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17691.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005830.14 ENSMUSP00000005830.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005830.14Link to Ensembl Protein Viewer:ENSMUSP00000005830.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000005830Re-query CCDS DB by Protein ID:ENSMUSP00000005830
Original member Current member NCBI NM_026602.4 NP_080878.2 Accepted alive Link to Nucleotide Sequence:NM_026602.4Link to Protein Sequence:NP_080878.2Re-query CCDS DB by Nucleotide ID:NM_026602Re-query CCDS DB by Protein ID:NP_080878Link to BLAST:NP_080878.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080878.2 225 Q9D287 225 100% 0 0

Chromosomal Locations for CCDS 17691.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 103171773 103171865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103171948 103172040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103173275 103173345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103174340 103174501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103175619 103175669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103177339 103177419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 103178355 103178481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (678 nt):
ATGGCGGGCACGGGCTTGGTAGCCGGAGAGGTGGTGGTAGATGCGCTACCATATTTTGACCAAGGCTATG
AGGCACCCGGCGTGCGGGAAGCGGCGGCGGCCCTGGTGGAGGAGGAGACGCGCAGATACCGACCTACCAA
GAACTACCTGAGCTACCTGACGGCCCCGGATTATTCTGCCTTTGAAACAGACATAATGAGAAATGAATTT
GAAAGACTCGCTGCTCGACAACCGATTGAATTACTCAGCATGAAACGATATGAACTTCCAGCCCCTTCCT
CAGGTCAAAAAAATGACATTACTGCATGGCAAGAATGTGTAAACAATTCTATGGCTCAGTTGGAGCACCA
GGCGGTCCGGATCGAGAATCTGGAGCTGATGTCACAGCATGGATGCAATGCCTGGAAGGTGTACAATGAA
AATCTTGTTCATATGATTGAACATGCACAGAAAGAGCTTCAGAAGTTAAGGAAACATATTCAAGATTTGA
ACTGGCAGCGAAAGAACATGCAGCTTACAGCTGGATCTAAGCTGAGAGAAATGGAGTCAAACTGGGTGTC
GCTGGTGAGTAAGAACTATGAGATTGAGCGGACGATTGTCCAGCTGGAGAACGAGATCTATCAGATCAAG
CAGCAGCACGGGGAGGCCAACAAGGAAAACATCCGCCAAGACTTCTAA

Translation (225 aa):
MAGTGLVAGEVVVDALPYFDQGYEAPGVREAAAALVEEETRRYRPTKNYLSYLTAPDYSAFETDIMRNEF
ERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELMSQHGCNAWKVYNE
NLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVSLVSKNYEIERTIVQLENEIYQIK
QQHGEANKENIRQDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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