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Report for CCDS17618.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17618.1 Public Mus musculus 3 Adamtsl4 23 108 98 CCDS HistoryNCBI Gene:229595Re-query CCDS DB by CCDS ID:17618.1Re-query CCDS DB by GeneID:229595See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17618.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015994.3 ENSMUSP00000015994.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015994.3Link to Ensembl Protein Viewer:ENSMUSP00000015994.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000015994Re-query CCDS DB by Protein ID:ENSMUSP00000015994
Original member Current member EBI ENSMUST00000117782.7 ENSMUSP00000113424.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117782.7Link to Ensembl Protein Viewer:ENSMUSP00000113424.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117782Re-query CCDS DB by Protein ID:ENSMUSP00000113424
Original member Current member NCBI NM_001301705.1 NP_001288634.1 Accepted alive Link to Nucleotide Sequence:NM_001301705.1Link to Protein Sequence:NP_001288634.1Re-query CCDS DB by Nucleotide ID:NM_001301705Re-query CCDS DB by Protein ID:NP_001288634Link to BLAST:NP_001288634.1
Original member Current member NCBI NM_144899.3 NP_659148.2 Accepted alive Link to Nucleotide Sequence:NM_144899.3Link to Protein Sequence:NP_659148.2Re-query CCDS DB by Nucleotide ID:NM_144899Re-query CCDS DB by Protein ID:NP_659148Link to BLAST:NP_659148.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288634.1 1036 Q80T21 1036 100% 0 0
NP_659148.2 1036 Q80T21 1036 100% 0 0

Chromosomal Locations for CCDS 17618.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 95676833 95676969 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95677111 95677255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95677528 95677707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95677808 95678005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95679588 95679764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95679991 95680195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95680445 95680574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95680737 95680922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95681024 95681135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95681260 95681432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95681652 95681856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95682210 95682346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95683308 95683410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95683633 95684239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95684361 95684698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95684959 95685016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 95685456 95685475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3111 nt):
ATGGAATCTTGGCTGGGCAGGCTCTGGCTGTGTATGATGCTGCTCCTGCCTCTCCCTCAGCCCTGCCAGG
ATCAGGAGCTGTTTGGACCTTCTCATCAGCTGCCATCAGAGGAGGGCCAGGTCCCTGAAGGCCTCTGGGG
ACCTTGGGGTCGATGGGCTTCCTGCTCCCAGCCCTGTGGGGTGGGGGTGCAGCGCAGGAGCCGAACATGT
GAACTGCACCCAGCCCTACCCCTCCCTCCCCGACCCCCAAGACATCCAGAAGCCCACCGGCCCCGGGGCC
AGGGCTCCAGACCCCAGACTCCACGGGATCCCCAGTCTCTGTATAGGCCACAGCCTCGGGGAAGGGGTGG
CCCTCTTCGAGCTCCTGCTTCTCAAGTGGGGAGAGAGGAAACCCAGGAGCCTCAAGGGGCCCAGAGGTTC
CGGGTTCGAGACCCCATCAAGCCAGGGATGTTCGGTTATGGGAGAGTGCCTTTTGCCTTGCCTCTGCACC
GGAGCCGCAGGCATCCTCACAGACCCGGGCAACCCAAGAACTCTTCTACAGGGGAAGGGATGGTTCCATC
TCAGCCTCCAAGCACAGAGCTGGCCTCTGAAAAGCACGGCCCTCACATGCAGCCCCCTGAACCCCGTTCT
CACTCAGCTGAAACTCCAAGGTCTGGAACTGCTCAGACAGAAGTGCTCCCCAGAACTAGTTCTGCTCCTT
CCTACACAGGGACCCCTGCACCTACCTCCTCTTTTGGAGACAGTAGGTCTTTCCAGGGATCCCTTGGGCC
ACGAATGCCACCTTCCCCGGGAAGTTGGAGCAGTCCCCAGGGAGCAGAGCGACGACACCCACCTCCTTTC
TCTCCTGTCCCCCGGAGCCAGCAGAGCAGGAGGCACTGGAGACCTCCAGGTCCTCACAGGTCCCCAGATG
GCTGGCTGCCCCTGACAAGAGACTCCAGCCCACTCTGGAGCATCTTTGCTCCCAGTATCCCTGCTCCAAA
CTGTTCTGGGGAAAGTGAACAGATGCGAGCCTGCAGCCAGGAGCCTTGCCCCCCTGAGCAGCCAGACCCC
AGGGCCCTACAGTGTGCCGCCTTTGACTCCCAGGAATTCATGGGCCAGCTGTACCAGTGGGAGCCCTTCA
CCGAAGTTCAGGGCTCCCAGCGCTGTGAACTGAACTGCCGCCCCCGTGGCTTCCGATTCTATGTCCGACA
CACTGAAAAGGTGCAGGATGGAACCCTGTGTCAGCCTGGATCCCTAGACATCTGTGTGGCTGGACGCTGC
CTGAGCCCTGGCTGTGATGGGGTCCTTGGCTCTGGCAGGCGTCCGGATGGCTGCGGAGTCTGCGGGGGTG
ATGGTTCTACCTGCCGCCTGGTTTCGGGAAATCTCACTGACCGAGGGGGCCCCTTGGGCTATCAGAAGAT
CCTGTGGATCCCTGCCGGGGCCTCCCACCTTCACATTTCCCAGTTGCGACCCAGTTCCAATTACCTCGCA
CTCCGAGGGCCTGGGGGCCGCTCCATTATCAATGGGAACTGGGCTGTGGATCCTCCAGGGTCCTATACAG
CCATTGGGACTGTCTTCCAGTATAACCGTCCTCCACGGGAAGAAGGCAAGGGGGAGAGTCTGTCAGCAGA
AGGCCCTACCACTCAGCCTGTGGACGTCTATATGATCTTTCAAGAGGACAACCCAGGTGTTTTTTATCAG
TATGTCATCTCTTCCCCTCCTGCAGTCCTAGAGAGTCCTTCCACAAAGCCTCCAGCCCTTCAGCCTCAGC
CTGAGATGCTGAGGGGGGAGCCCCTACTCCCCTCAGCCCCCCGCCCAGTCCGGGCACCAGGCACCCTCCA
ACGTCAGGTGCGGATTCCCCAAGTGCCTCCTCCGACTCGTGTCAGGACAGCCATGGGGTCTTCTGCTGGA
TACTGGAAACAAGTGGGGCACTCTGAGTGTTCAGCATCCTGTGGCAAAGGTGTTTGGCACCCCATTTTCC
TCTGCATTTCCCGTGAGTCAGGAGAGGAGTTGGATGAACAGAGCTGTGCTGTGGGGGCCAGACCCCCAGC
TTCCCCTGAACCCTGCCATGGACCCCCGTGTCCTCCATACTGGGAGGCTGGCGAGTGGACATCCTGCAGC
CGATCCTGTGGCCCTGGCACCCAGCACCGCCAGCTACTCTGCAGACAGGAATTCGGAGGTGGTGGCTCCT
CGGTACCTCCAGAGCGCTGTGGACATCTCCCCCGGCCCAACATCACCCAGCCTTGTCAGCTGCACCTCTG
TGGCCACTGGGAGATTAGCTCCCCCTGGAGCCAGTGCTCTGTGCGCTGTGGTCGTGGTCAGAGGAGCCGG
CAAGTTCGGTGTGTTGGCAGTAATGGTGATGAGGTGGACAAGCAGGAGTGTGCTTCAGGGCCCCCGCCGC
CCCCCAGCAGAGAGGCCTGTGACATGGGCCCCTGCACCACAGCCTGGTTCTACAGTGACTGGAGTTCCAA
GTGCTCAGCCGAGTGCGGGACAGGAATCCAGAGACGCGCTGTGGTCTGCCTTAGGAGTGGGGAGACCCTT
CAGGGAGACCCGGAAGCAGGAAGCACTGAGCAGGGCTGCCCTCTCAGAAGCCGCCCTCCCGATATGCGTG
CCTGCAGTTTAGGGCCCTGTGAGAGGACATGGCGCTGGTTCACAGGCCCCTGGAGTGAGTGTTCCTCGGA
GTGTGGGTCTGGCACACAACACAGAGACATTATCTGTGTGTCCAAGCTGGGGGCCGAGTTCAATGTGACT
TCTCCCAGCAACTGTTCCCACCTACCCAGGCCGCCTGCCCTGCAGCCCTGTCAGGGGCAGGCCTGTGAGG
ACAAATGGTTCTCCACTCTCTGGAGTCCGTGTTCTCGATCCTGCCAGGGAGGCATGCAGACGAGGGAAGT
CCAGTGCCTGAGTGGCAACCAGACTCTCAGCTCCCGATGCCCTCCTCACCTGAGACCTTCCAGGAAGCGG
CCCTGCAACAGCCAACCCTGCAACCAGCGACCAGATGACCAATGCAAGGACAGCTCTCCACACTGCCCCC
TGGTGGTACAGGCCCGGCTCTGCGTCTACCCCTACTACACAACTACCTGCTGCCGCTCTTGTGCCCATGT
CCTGGAGCAGTCCCAGCTGGAACCGGCTTGA

Translation (1036 aa):
MESWLGRLWLCMMLLLPLPQPCQDQELFGPSHQLPSEEGQVPEGLWGPWGRWASCSQPCGVGVQRRSRTC
ELHPALPLPPRPPRHPEAHRPRGQGSRPQTPRDPQSLYRPQPRGRGGPLRAPASQVGREETQEPQGAQRF
RVRDPIKPGMFGYGRVPFALPLHRSRRHPHRPGQPKNSSTGEGMVPSQPPSTELASEKHGPHMQPPEPRS
HSAETPRSGTAQTEVLPRTSSAPSYTGTPAPTSSFGDSRSFQGSLGPRMPPSPGSWSSPQGAERRHPPPF
SPVPRSQQSRRHWRPPGPHRSPDGWLPLTRDSSPLWSIFAPSIPAPNCSGESEQMRACSQEPCPPEQPDP
RALQCAAFDSQEFMGQLYQWEPFTEVQGSQRCELNCRPRGFRFYVRHTEKVQDGTLCQPGSLDICVAGRC
LSPGCDGVLGSGRRPDGCGVCGGDGSTCRLVSGNLTDRGGPLGYQKILWIPAGASHLHISQLRPSSNYLA
LRGPGGRSIINGNWAVDPPGSYTAIGTVFQYNRPPREEGKGESLSAEGPTTQPVDVYMIFQEDNPGVFYQ
YVISSPPAVLESPSTKPPALQPQPEMLRGEPLLPSAPRPVRAPGTLQRQVRIPQVPPPTRVRTAMGSSAG
YWKQVGHSECSASCGKGVWHPIFLCISRESGEELDEQSCAVGARPPASPEPCHGPPCPPYWEAGEWTSCS
RSCGPGTQHRQLLCRQEFGGGGSSVPPERCGHLPRPNITQPCQLHLCGHWEISSPWSQCSVRCGRGQRSR
QVRCVGSNGDEVDKQECASGPPPPPSREACDMGPCTTAWFYSDWSSKCSAECGTGIQRRAVVCLRSGETL
QGDPEAGSTEQGCPLRSRPPDMRACSLGPCERTWRWFTGPWSECSSECGSGTQHRDIICVSKLGAEFNVT
SPSNCSHLPRPPALQPCQGQACEDKWFSTLWSPCSRSCQGGMQTREVQCLSGNQTLSSRCPPHLRPSRKR
PCNSQPCNQRPDDQCKDSSPHCPLVVQARLCVYPYYTTTCCRSCAHVLEQSQLEPA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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