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Report for CCDS17416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17416.1 Public Mus musculus 3 Golim4 23 108 98 CCDS HistoryNCBI Gene:73124Re-query CCDS DB by CCDS ID:17416.1Re-query CCDS DB by GeneID:73124See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17416.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000038563.13 ENSMUSP00000048997.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000038563.13Link to Ensembl Protein Viewer:ENSMUSP00000048997.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000038563Re-query CCDS DB by Protein ID:ENSMUSP00000048997
Original member Current member EBI ENSMUST00000167078.7 ENSMUSP00000132910.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000167078.7Link to Ensembl Protein Viewer:ENSMUSP00000132910.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000167078Re-query CCDS DB by Protein ID:ENSMUSP00000132910
Original member Current member NCBI NM_175193.6 NP_780402.1 Accepted alive Link to Nucleotide Sequence:NM_175193.6Link to Protein Sequence:NP_780402.1Re-query CCDS DB by Nucleotide ID:NM_175193Re-query CCDS DB by Protein ID:NP_780402Link to BLAST:NP_780402.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780402.1 655 Q8BXA1 655 100% 0 0

Chromosomal Locations for CCDS 17416.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 75878031 75878177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75878646 75878717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75886275 75886343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75886673 75886840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75890522 75890631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75891889 75891971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75892783 75893036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75894835 75895137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75897971 75898132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75903247 75903329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75906399 75906549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75908130 75908183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75910009 75910058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75911575 75911649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 75956112 75956298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1968 nt):
ATGGGAAACGGGATGTGCTCCCGAAAGCAGAAGCGGATCTTCCAGACGCTGCTGCTTCTCACGGTGGTCT
TCGGCTTCCTCTATGGCGCGATGCTCTACTTGGAACTGCAGACGCAGCTGCGCAAAGCTGAGGCAGTGGC
GCTCAAGTACCAGCAGCACCAGGACTCTCTCTCTGCCCAGTTGCAAGTTGTATATGAACACAGATCAAGA
TTAGAGAAATCTTTGCAAAAAGAAAGGCTTGAACACAAGAAAGCAAAGGAAGATTTCCTTGTTTATAAGT
TAGAAGCACAAGAAACACTTAACAAAGGAAGGCAAGATTCCAATAGCAGATATAGTGCATTGAATGTCCA
ACATCAGATGCTGAAAAGTCAGCATGAGGAGCTGAGGAAGCAGCACAGTGACCTGGAAGAGGAACACCGG
AAGCAAGGGGAAGACTTCAGTAGAACGTTCAATGACCACAAGCAGAGATACCTGCAGCTTCAGCAAGAAA
AGGAACAAGAACTTTCTAAGCTAAAAGAAACTGTATATAATTTGAGAGAAGAGAATAGACAACTAAGAAA
AGCACACCAAGACATTCACACACAGCTTCAAGACGTCAAGACTCAAGTTGCAGAATATAAACAACTGAAA
GATACACTGAACAGGATTCCAAGCTTTCGAAATCCTGACCCAGTCGAGCAGCAAAATGTCACCTTTCCCC
ATGGGACTCACCCTCCTCAAGGTTACAACGGAAGAGAGAAGCTGACAGGAGAGCTCCAAGAGGTGCAGCC
GAATCACGAAGCAGGGCCTAGAAGAATGGAAGAGAAACCTCTGTCTTCCATGCAGAAGGATGCAGGATTC
CAGGCTCTAGAAGAGCAGAATCAAGTGGAACCCAGAGAGCCAGAGGAGCGTCAAGTGGAAGAGGAACACA
GGAAGGCACTGGAGGAGGAGGAGATGGAGCAGGTGGGGCAGGCGGAGCATCTGGAGGAAGAACACGACCC
ATCACCAGAGGAGCAGGATCGAGACTGGCGGGATCAGCAGGGACAGAATGCAGCCCACCTTCTGGATGGC
CACCCTCAAGCTGAGGTGGAGCATTCGACCAAGGCAGCTACAAACTTCCAATCCCCATATGAGGAACAGT
TGGAACAGCAGAGGCTGGCAGCGAGGAGAGATGAGGAAGCCCAGCGGCTGAGAGAACATCAGGAAGCCTT
GCACCAACAGAGGCTCCATGGGCAGTTGCTAAGACAACAGCAGCAGCAACAGTTCCTGGCCAGAGAGATG
GCTCAGCAGAAGCAGGTAGCCCATGAAGATGGCCAGCAGCAGCACCAGGAGCAGCTAAGGCAGCAAGCTC
ATTACAATGCTGTGGAGAATGACATCGCACAGGGAGTCGAGGACCAGGGAATCCCCGAAGAAGAGGGAGG
TGCCTATGACAGAGATAACCAGCGCCAAGATGAAGCTGAAGGAGACCCAGGCAACAGACAGGAACTTCGT
GAACCAGGACACCAAGAAGGCGACCCTGAAGTTGAAGCAGATAGGGCAGCTGTGGAGGATATAAACCCAG
CAGATGACCCCAACAATCAAGGCGAAGATGAATTTGAGGAAGCCGAGCAAGTGAGAGAAGAAAATTTGCC
AGAGGAAAGTGAAGAGCAAAAACAAAGCGAAGCAAAGCAAGGGAATGTAGAAATGGATGAGCACTTGGTG
ATGGCAGGGAATCCAGACCAGCAGGAGGATAATGTTGATGAGCAGTATCAGGACGAAGGAGAGGAAGAGG
TTCAGGAAGATCTGACTGAAGAGAAAAAACGGGAAATGGAGCATAATGTTGAAGAGACATATGGTGAACA
TCCTGATGATAAGAATAATGATGGTGAAGAACAAGGAGTTCACAACAGGGCGCATCCTAAAGGAAGACAG
GAGCATTATGAGGAGGAGGAAGATGAAGAAGACGGGGCTGCTGTTGCTGAGAAATCACATCGCAGAGCTG
AAATGTAA

Translation (655 aa):
MGNGMCSRKQKRIFQTLLLLTVVFGFLYGAMLYLELQTQLRKAEAVALKYQQHQDSLSAQLQVVYEHRSR
LEKSLQKERLEHKKAKEDFLVYKLEAQETLNKGRQDSNSRYSALNVQHQMLKSQHEELRKQHSDLEEEHR
KQGEDFSRTFNDHKQRYLQLQQEKEQELSKLKETVYNLREENRQLRKAHQDIHTQLQDVKTQVAEYKQLK
DTLNRIPSFRNPDPVEQQNVTFPHGTHPPQGYNGREKLTGELQEVQPNHEAGPRRMEEKPLSSMQKDAGF
QALEEQNQVEPREPEERQVEEEHRKALEEEEMEQVGQAEHLEEEHDPSPEEQDRDWRDQQGQNAAHLLDG
HPQAEVEHSTKAATNFQSPYEEQLEQQRLAARRDEEAQRLREHQEALHQQRLHGQLLRQQQQQQFLAREM
AQQKQVAHEDGQQQHQEQLRQQAHYNAVENDIAQGVEDQGIPEEEGGAYDRDNQRQDEAEGDPGNRQELR
EPGHQEGDPEVEADRAAVEDINPADDPNNQGEDEFEEAEQVREENLPEESEEQKQSEAKQGNVEMDEHLV
MAGNPDQQEDNVDEQYQDEGEEEVQEDLTEEKKREMEHNVEETYGEHPDDKNNDGEEQGVHNRAHPKGRQ
EHYEEEEDEEDGAAVAEKSHRRAEM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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