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Report for CCDS17379.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17379.1 Public Mus musculus 3 Dhx36 23 108 98 CCDS HistoryNCBI Gene:72162Re-query CCDS DB by CCDS ID:17379.1Re-query CCDS DB by GeneID:72162See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17379.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029336.5 ENSMUSP00000029336.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029336.5Link to Ensembl Protein Viewer:ENSMUSP00000029336.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000029336Re-query CCDS DB by Protein ID:ENSMUSP00000029336
Original member NCBI NM_028136.2 NP_082412.2 Updated not alive Link to Nucleotide Sequence:NM_028136.2Link to Protein Sequence:NP_082412.2Re-query CCDS DB by Nucleotide ID:NM_028136Re-query CCDS DB by Protein ID:NP_082412
Current member NCBI NM_028136.3 NP_082412.2 Accepted alive Link to Nucleotide Sequence:NM_028136.3Link to Protein Sequence:NP_082412.2Re-query CCDS DB by Nucleotide ID:NM_028136Re-query CCDS DB by Protein ID:NP_082412Link to BLAST:NP_082412.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082412.2 1001 Q8VHK9 1001 100% 0 0

Chromosomal Locations for CCDS 17379.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 62470562 62470747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62471322 62471474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62471999 62472119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62472728 62472818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62472930 62473029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62475270 62475353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62477283 62477369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62477506 62477679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62479320 62479418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62480802 62480919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62484131 62484274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62484955 62485019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62487010 62487065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62488130 62488217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62488545 62488647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62488898 62489038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62492351 62492432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62493730 62493896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62494344 62494418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62495458 62495537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62496729 62496899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62498090 62498128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62500834 62501068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62501974 62502098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 62506718 62506939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3006 nt):
ATGAGCTACGACTATCATCAGAGCTGGAGCCGCGATGGGGGCCCACGGGGCTCCGGCCAGGGCTCCAGCG
GCGGCGGCGGCGGAGGGAGCCGGGGCTCGGGCGGCGGCGGAGGGGGCCGCGGCGGCCGGGGCCGGCATCC
CGCACACCTTAAGGGTCGCGAGATCGGCCTGTGGTACGCCAAGAAGCAGACGCAGAAGAACAAGGAGGCT
GAGAGGCAGGAGAGAGCTGTAGTGCACATGGATGAACGTCGAGAAGAGCAAATTGTGCAGCTGCTGAATT
CAGTCCAAGCTAAGACTGACAAAGATTCAGAAGCGCAGATATCCTGGTTTGCTCCTGAGGATCATGGGTA
TGGTACTGAAGTTTCTTCAGAGAAAAAAATAAACTCAGAGAAGAAACTTGACAACCAGGAAAAGAAATTG
CTAAACCAAGAAAAAAAGACATTTAGGATCACAGACAAATCATATATTGACCGAGATTCTGAGTATTTAT
TGCAAGAAAATGAGCCAAACCTAAGCTTAGATCAACATTTACTGGAAGATTTACAAAGGAAAAAAACTGA
CCCTCGATATATAGAGATGCAGCGTTTCAGAAAAAAGCTGCCTTCATATGGAATGCAGAAGGAGCTGGTA
AATCTAATCAATAACCATCAGGTGACAGTAATAAGTGGTGAAACTGGTTGTGGCAAAACCACTCAGGTTA
CGCAGTTCATCTTGGATAACTACATCGAAAGAGGAAAAGGGTCTGCCTGCAGAATAGTGTGTACTCAGCC
GAGAAGAATTAGTGCCATTTCAGTCGCTGAGAGAGTGGCCACAGAAAGGGCAGAGTCTTGTGGCAATGGT
AATAGTACTGGATACCAGATTCGTCTTCAAAGTCGGTTGCCAAGGAAACAAGGTTCTATCTTATACTGCA
CAACAGGAATCATTCTTCAGTGGCTCCAGTCCGACTCACGTTTGTCCAGTGTTAGTCATATTGTACTTGA
TGAAATTCATGAAAGGAATCTACAGTCGGATGTTTTAATGACTGTTATTAAAGATCTTCTCCATTTTCGA
TCTGATCTCAAAGTAATATTGATGAGTGCAACTTTGAATGCTGAGAAATTTTCAGAATATTTTGGTAACT
GTCCAATGATACATATACCCGGGTTTACTTTTCCAGTTGTGGAATATCTTTTGGAAGATATCATTGAAAA
AATAAGATATGTTCCAGACCAAAAAGAACATAGATCCCAGTTCAAGAGGGGTTTCATGCAGGGTCATGTA
AATAGACAAGAAAAAGAAGAAAAAGAGGCCATCTATAAGGAACGCTGGCCAGCGTATATAAAGGAACTGC
GGACAAGATACTCTGCAAGTACCGTAGATGTTTTGCAAATGATGGATGATGATAAAGTTGATCTGAATTT
GATTGCTGCCCTTATTCGATACATTGTTTTGGAAGAAGAGGATGGTGCAATATTGGTCTTTCTACCAGGC
TGGGACAATATCAGTACTTTGCATGATCTCTTGATGTCACAAGTGATGTTTAAATCAGATAAGTTTCTCA
TTATACCTTTACATTCACTGATGCCTACCGTCAACCAGACACAGGTATTTAAAAAAACTCCTCCCGGTGT
TCGGAAAATAGTAATTGCTACCAACATTGCAGAGACTAGCATCACCATAGATGATGTGGTTTATGTAATA
GATGGAGGAAAAATTAAAGAAACACACTTTGACACACAGAACAACATCAGTACCATGTCTGCTGAGTGGG
TTAGTAAAGCTAATGCCAAACAGAGGAAAGGGAGAGCTGGAAGAGTTCAGCCTGGTCATTGTTATCATCT
GTATAATGGTCTTAGAGCAAGTCTTCTAGATGACTACCAACTACCAGAAATTTTGAGAACTCCTTTGGAA
GAACTCTGTTTGCAAATAAAGATCTTGAGGCTGGGTGGAATTGCTTATTTTCTGAGTAGATTAATGGATC
CACCATCAAATGAGGCAGTGGTGCTCTCCATAAAACACCTAATGGAACTGAGTGCTTTGGATAAGCAAGA
AGAATTAACACCTCTTGGTGTCCATTTAGCCCGACTGCCTGTTGAGCCACATATTGGAAAAATGATTCTC
TTTGGAGCTTTGTTCTGCTGCTTAGATCCAGTTCTCACCATTGCTGCCAGTCTCAGCTTTAAAGATCCCT
TTGTCATTCCATTGGGAAAAGAAAAGATTGCAGATGCAAGAAGAAAAGAACTGGCAAAGGAAACTAGAAG
TGATCACCTGACAGTTGTGAATGCATTTGAGGGCTGGGAAGAAGCCAAACGACGTGGTTTCAGGTATGAA
AAGGACTACTGCTGGGAATATTTTCTGTCTTCGAACACACTACAGATGCTGCATAACATGAAGGGACAGT
TTGCTGAGCATCTTCTTGGAGCTGGATTTGTAAGCAGTAGAAGTCCCAAAGATCCAAAAGCTAATATAAA
TTCAGATAATGAGAAGATAATTAAAGCTGTCATCTGTGCTGGTTTATATCCCAAAGTTGCTAAAATCCGA
CTAAATTTGGGTAAAAAGAGGAAAATGGTAAAAGTTCACACGAAGTCTGACGGCCTGGTTTCTATTCATC
CTAAGTCTGTCAACGTGGAGCAGACAGACTTCCACTACAACTGGCTTATCTATCACCTGAAGATGAGAAC
AAGCAGTATATACTTGTACGACTGTACAGAAGTGTCACCATACTGCCTCCTGTTCTTTGGAGGAGATATT
TCCATCCAGAAAGATAAGGATCAGGAAATTATTGCTGTAGATGAGTGGATTGTGTTTCAGTCTCCAGAAA
GAATTGCCCATCTTGTTAAGGGACTAAGAAAGGAACTGGATAGCCTTCTACAAGAGAAGATTGAAAGCCC
TCATCCTGTAGACTGGGACGACACTAAGTCAAGAGACTGTGCAGTACTGTCAGCTATTCTAGACTTGATC
AAAACTCAAGAAAAGGCTACTCCAAGGAACTTGCCACCACGGTCACAGGACGGATATTATAGCTGA

Translation (1001 aa):
MSYDYHQSWSRDGGPRGSGQGSSGGGGGGSRGSGGGGGGRGGRGRHPAHLKGREIGLWYAKKQTQKNKEA
ERQERAVVHMDERREEQIVQLLNSVQAKTDKDSEAQISWFAPEDHGYGTEVSSEKKINSEKKLDNQEKKL
LNQEKKTFRITDKSYIDRDSEYLLQENEPNLSLDQHLLEDLQRKKTDPRYIEMQRFRKKLPSYGMQKELV
NLINNHQVTVISGETGCGKTTQVTQFILDNYIERGKGSACRIVCTQPRRISAISVAERVATERAESCGNG
NSTGYQIRLQSRLPRKQGSILYCTTGIILQWLQSDSRLSSVSHIVLDEIHERNLQSDVLMTVIKDLLHFR
SDLKVILMSATLNAEKFSEYFGNCPMIHIPGFTFPVVEYLLEDIIEKIRYVPDQKEHRSQFKRGFMQGHV
NRQEKEEKEAIYKERWPAYIKELRTRYSASTVDVLQMMDDDKVDLNLIAALIRYIVLEEEDGAILVFLPG
WDNISTLHDLLMSQVMFKSDKFLIIPLHSLMPTVNQTQVFKKTPPGVRKIVIATNIAETSITIDDVVYVI
DGGKIKETHFDTQNNISTMSAEWVSKANAKQRKGRAGRVQPGHCYHLYNGLRASLLDDYQLPEILRTPLE
ELCLQIKILRLGGIAYFLSRLMDPPSNEAVVLSIKHLMELSALDKQEELTPLGVHLARLPVEPHIGKMIL
FGALFCCLDPVLTIAASLSFKDPFVIPLGKEKIADARRKELAKETRSDHLTVVNAFEGWEEAKRRGFRYE
KDYCWEYFLSSNTLQMLHNMKGQFAEHLLGAGFVSSRSPKDPKANINSDNEKIIKAVICAGLYPKVAKIR
LNLGKKRKMVKVHTKSDGLVSIHPKSVNVEQTDFHYNWLIYHLKMRTSSIYLYDCTEVSPYCLLFFGGDI
SIQKDKDQEIIAVDEWIVFQSPERIAHLVKGLRKELDSLLQEKIESPHPVDWDDTKSRDCAVLSAILDLI
KTQEKATPRNLPPRSQDGYYS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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