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Report for CCDS17368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17368.1 Public Mus musculus 3 Siah2 23 108 98 CCDS HistoryNCBI Gene:20439Re-query CCDS DB by CCDS ID:17368.1Re-query CCDS DB by GeneID:20439See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 17368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000070368.7 ENSMUSP00000067496.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000070368.7Link to Ensembl Protein Viewer:ENSMUSP00000067496.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000070368Re-query CCDS DB by Protein ID:ENSMUSP00000067496
Original member Current member NCBI NM_009174.3 NP_033200.2 Accepted alive Link to Nucleotide Sequence:NM_009174.3Link to Protein Sequence:NP_033200.2Re-query CCDS DB by Nucleotide ID:NM_009174Re-query CCDS DB by Protein ID:NP_033200Link to BLAST:NP_033200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033200.2 325 Q06986 325 100% 0 0

Chromosomal Locations for CCDS 17368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 58675886 58676443 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 58691396 58691815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (978 nt):
ATGAGCCGCCCGTCCTCCACCGGCCCCAGCGCTAACAAACCCTGCAGCAAGCAGCCGCCGCCGCCTCAGA
CCCCGCACGCCCCGTCCCCGGCTGCGCCCCCGGCCGCCGCCACCATCTCGGCAGCGGGCCCCGGCTCGTC
CGCGGTGCCCGCCGCGGCAGCGGTGATCTCAGGCCCCGGAGCCGGCGGCGGGGCCGACCCGGTGTCCCCG
CAGCACCACGAGCTGACCTCGCTCTTCGAGTGCCCGGTCTGCTTTGACTATGTCCTGCCCCCCATTCTGC
AGTGCCAGGCCGGGCACCTGGTGTGTAACCAATGCCGCCAGAAGTTAAGCTGCTGCCCGACGTGCAGGGG
CGCCCTAACGCCCAGCATCAGGAACCTGGCTATGGAGAAGGTCGCCTCGGCAGTTCTGTTTCCCTGTAAG
TATGCTACCACGGGCTGTTCCCTGACTCTACACCATACAGAGAAACCAGAGCATGAAGACATCTGTGAAT
ACCGTCCTTATTCCTGTCCTTGTCCTGGTGCGTCCTGCAAGTGGCAGGGATCCCTGGAAGCTGTGATGTC
CCATCTCATGCATGCCCACAAGAGTATCACTACCCTTCAGGGAGAGGACATAGTCTTTCTAGCTACAGAC
ATTAACCTGCCAGGGGCTGTGGACTGGGTGATGATGCAGTCCTGTTTTGGCCACCACTTCATGCTGGTAC
TTGAAAAGCAAGAGAAGTACGAAGGCCACCAGCAGTTCTTTGCCATCGTCCTCCTCATTGGCACCCGAAA
GCAAGCTGAGAACTTTGCCTACAGACTGGAGTTGAATGGGAACCGGAGGAGACTGACCTGGGAGGCCACA
CCTCGGTCCATTCATGATGGCGTGGCTGCAGCCATCATGAACAGTGACTGTCTTGTTTTTGACACAGCCA
TAGCACATCTCTTTGCAGATAATGGGAACCTTGGAATCAATGTCACGATATCTACATGCTGTCAGTGA

Translation (325 aa):
MSRPSSTGPSANKPCSKQPPPPQTPHAPSPAAPPAAATISAAGPGSSAVPAAAAVISGPGAGGGADPVSP
QHHELTSLFECPVCFDYVLPPILQCQAGHLVCNQCRQKLSCCPTCRGALTPSIRNLAMEKVASAVLFPCK
YATTGCSLTLHHTEKPEHEDICEYRPYSCPCPGASCKWQGSLEAVMSHLMHAHKSITTLQGEDIVFLATD
INLPGAVDWVMMQSCFGHHFMLVLEKQEKYEGHQQFFAIVLLIGTRKQAENFAYRLELNGNRRRLTWEAT
PRSIHDGVAAAIMNSDCLVFDTAIAHLFADNGNLGINVTISTCCQ


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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