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Report for CCDS17346.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17346.1 Public Mus musculus 3 Proser1 23 108 98 CCDS HistoryNCBI Gene:212127Re-query CCDS DB by CCDS ID:17346.1Re-query CCDS DB by GeneID:212127See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17346.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058577.4 ENSMUSP00000055253.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058577.4Link to Ensembl Protein Viewer:ENSMUSP00000055253.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058577Re-query CCDS DB by Protein ID:ENSMUSP00000055253
Original member Current member NCBI NM_173382.2 NP_775558.2 Accepted alive Link to Nucleotide Sequence:NM_173382.2Link to Protein Sequence:NP_775558.2Re-query CCDS DB by Nucleotide ID:NM_173382Re-query CCDS DB by Protein ID:NP_775558Link to BLAST:NP_775558.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775558.2 913 Q5PRE5 913 100% 0 0

Chromosomal Locations for CCDS 17346.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 53464275 53464319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53467102 53467167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53469481 53469549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53470273 53470367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53471424 53471517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53471976 53472086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53473484 53473567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53474688 53474766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53475315 53475410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53475657 53475701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53477483 53479166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53479560 53479710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 53480512 53480634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2742 nt):
ATGGACAAAAAGTCCTTTGAGACGGTGCTGGATGAAATTCGAAAGGCTGTTTTAACGGAATATAAATTAA
AAGCAATTGAGTATGTTCATGGGTACTTCTCCAGCGAACAGGTGGTTGATCTGCTAAGGTACTTCTCCTG
GGCCGAGCCACAGCTGAAGGCCATGAAAGCACTCCAGCATAAAATGGTGGCCGTCCACCCAGCAGAAGTG
GTGAGCATCTTGAGCTGTTTCACCTTTAGTAAGGACAAGCTGGCCGCTCTGGAGCTCTTGGCCTCAAACA
TTGTGGACGCACAGAACTCTCGTCCCATTGAAGATTTATTCAGAATCAACATGTCTGAGAAGAAACGGTG
CAAGAGAGTCCTGGAGCAGGCTTCCAAGGCGGGCTGCAAAGCCCCTCATGCCATGATTTCTTCGTGTGGA
ACCTTCCCAGGAAACCCCTATCCCAAAGGCAAACCCAGTCGCATCAATGGAATTTTCCCTGGAACTCCTC
TGAAGAAGGATGGTGAAGAAATTACCAATGAAGGCAAAGGAATAGCAGCTCGGATTCTCGGGCCATCCAA
ACCACCTCCTTCAACATACAATCCACACAAACCTGTCCCCTACCCAATTCCTCCATGCCGGCCGCATGCA
ACTATCGCACCAAGTGCTTACAACAATGCGGGTCTGGTACCATTAGCCAATGTGATCGCTCCAGGCGTCC
CTCCTCCACCTCCGTACACTCCAAATCCAGCAGGAACAGACAATGAAGACCTTTCCAGTCAGTCAAAACC
TACACAGAGTCAAACATTTTCCACCCCTGCGAGTCAGCTCTTCTCTCCTCATGGTTCTTCTAATCCTTCG
ACACCTGCTGCGACTCCAGTACCTGCTGTGTCTCCAGCCAAGGCAGTAAACCATCCATCCGTGTCAGCAG
CTGCCACCGGGGCTGGAATGAGTGCGACCAACACTGCCCTGGCGGTGTTCCCAACGCCTCAGCCAAACAC
GCCAAACCCGACTGTGATCCGGACTCCCTCCGTGCCCGCAACGCCTGTTACTTCCACCCACAGCACCACA
CCCACTCCTGTCCCTTCCGTTTTTTCTGGCCTAGTGCCACTGCCCGGTCTATCTGCCACCCCCACCCTAC
CCACTCAGGCCAGCTCGATATCAAGGGTCACTCTGGCTTCCAGTGAGACATTTGCTTCCACGTGTGCCCC
ATTCTCCGGCCACTCCTCAGCCAGCTCTACTGCTGGGTCAGCCAGTAACCCAATCACAGCTCCCCTCTCG
TCGGTCTTCGCAGGTCTGCCTTTGCCCTTCCCACCAGCATCCCACAGCATAGCCACCCCGACTCCTTCTG
TAATTGCCAGTGCTGCGGGTCCACATGGTGTAAATAGCCCCCTTCTGTCTGCCTTAAAAGGCTTTCTTAC
ATCAAATGACACACACTTAATCAATTCCTCCGCCTTGCCATCTGCAGTCACAAGTGGACTGGCTTCACTA
TCCTCTCTTCCCAATCGAAACTCAGATTCTCCTGCCTCGGCCACTAACAAGTGCTATCCCCCTGCGGCTG
TTCCTGCTGCACAGAGGTCTTCCACCCCAGGGCTGGCCATGTTTCCAGGCCTGCAGTCTCCTGTGGCTAG
TGCCACGTCTGTAGCCCCAACGCTGCCTGCACAGTCTCCGTTAGCTACCCCCTCCACGGCAGTGCCAGTC
AGCTGTGGCTCCTCAGGCTCACTTTTGCACGGTCCCCATGCAGGTGGCATCTCATCTGCCCCTGCTGCAG
CAACTATGCCCGTTATGATAAAAAGTGAGCCCACAAGTCCCCCACCCTCGGCCTTCAAAGGCCCAGCTCA
CCCCGGGACTCCTGTTCGTGGTACCTTGGGCCTGTCAGGTGCCCTGGGCCGTGGGTACCCCACGACCTCA
GTGCCCATCAGTGTGTCTACTTGCCTTAACCCTGCACTGTCTGGGCTCTCCAGCCTGAGCACCCCGTTAG
CTGGTTCTATGTCCCTTCCGCCGCACGCATCCTCCACGCCCATCGCGCCTGTCTTCACTGCCCTTCCCCC
TTTCACTTCATTGACTAATAGTTTCCCTCTACCGGGCAGTCCCTCCCTCAATCCTGCTGTATCCCTCGCG
GGGTCGTCGACCACCACCACATCTGCAGCTGTACACCCTAGCTCTGCAACAGTGCGCTCAGTGCTACCCA
CCTCCAATGCCTCGCCTGCGGCCTTCCCACTCAACCTGTCCACCGCTGTACCCTCGCTCTTTGCTGTCAC
CCAGGGCCCGCTACCCACCTCTAACCCGTCCTACCCCGGCTTCCCTGTCTCCAGTGCCCCAAGCGGTGCC
CCCACGCTGCCCTCGTTCCCAGGGCTGCAGGCGCCCTCTACCGTGGCAGTTACCCCGTTGCCAGTGGCTG
CCTCGGCTCCATCGCCTGCACCTGTCCTCCCGGGATTTGCCTCAGCCTTCAGTTCCAACTTCAACTCCGC
CCTGGTGGCACAAGCCGGTTTGTCATCAGGACTCCAAGCTGCGGGTAGCTCTGTTTTTCCAGGCCTTCTG
TCCCTCCCAGGTATCCCTGGGTTTTCCCAGGCTCCTCCACAGTCGTCCCTGCAAGAGTTACAGCACAGTG
CAGCTGCACAGTCGGCTTTGTTACAGCAGGTCCACTCAGCATCGGCACTGGAGAGCTACCCGGCCCAGGC
AGACGGCTTTCCTAGCTATCCCTCCACGCCAGGAACACCATTTTCTCTGCAAACAGGCCTATCCCAAAGC
GGGTGGCAATGA

Translation (913 aa):
MDKKSFETVLDEIRKAVLTEYKLKAIEYVHGYFSSEQVVDLLRYFSWAEPQLKAMKALQHKMVAVHPAEV
VSILSCFTFSKDKLAALELLASNIVDAQNSRPIEDLFRINMSEKKRCKRVLEQASKAGCKAPHAMISSCG
TFPGNPYPKGKPSRINGIFPGTPLKKDGEEITNEGKGIAARILGPSKPPPSTYNPHKPVPYPIPPCRPHA
TIAPSAYNNAGLVPLANVIAPGVPPPPPYTPNPAGTDNEDLSSQSKPTQSQTFSTPASQLFSPHGSSNPS
TPAATPVPAVSPAKAVNHPSVSAAATGAGMSATNTALAVFPTPQPNTPNPTVIRTPSVPATPVTSTHSTT
PTPVPSVFSGLVPLPGLSATPTLPTQASSISRVTLASSETFASTCAPFSGHSSASSTAGSASNPITAPLS
SVFAGLPLPFPPASHSIATPTPSVIASAAGPHGVNSPLLSALKGFLTSNDTHLINSSALPSAVTSGLASL
SSLPNRNSDSPASATNKCYPPAAVPAAQRSSTPGLAMFPGLQSPVASATSVAPTLPAQSPLATPSTAVPV
SCGSSGSLLHGPHAGGISSAPAAATMPVMIKSEPTSPPPSAFKGPAHPGTPVRGTLGLSGALGRGYPTTS
VPISVSTCLNPALSGLSSLSTPLAGSMSLPPHASSTPIAPVFTALPPFTSLTNSFPLPGSPSLNPAVSLA
GSSTTTTSAAVHPSSATVRSVLPTSNASPAAFPLNLSTAVPSLFAVTQGPLPTSNPSYPGFPVSSAPSGA
PTLPSFPGLQAPSTVAVTPLPVAASAPSPAPVLPGFASAFSSNFNSALVAQAGLSSGLQAAGSSVFPGLL
SLPGIPGFSQAPPQSSLQELQHSAAAQSALLQQVHSASALESYPAQADGFPSYPSTPGTPFSLQTGLSQS
GWQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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