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Report for CCDS17246.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17246.1 Public Mus musculus 3 Slc7a12 23 108 98 CCDS HistoryNCBI Gene:140918Re-query CCDS DB by CCDS ID:17246.1Re-query CCDS DB by GeneID:140918See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17246.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037321.7 ENSMUSP00000038574.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037321.7Link to Ensembl Protein Viewer:ENSMUSP00000038574.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037321Re-query CCDS DB by Protein ID:ENSMUSP00000038574
Original member Current member NCBI NM_080852.3 NP_543128.1 Accepted alive Link to Nucleotide Sequence:NM_080852.3Link to Protein Sequence:NP_543128.1Re-query CCDS DB by Nucleotide ID:NM_080852Re-query CCDS DB by Protein ID:NP_543128Link to BLAST:NP_543128.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543128.1 465 Q8VIE6 465 100% 0 0

Chromosomal Locations for CCDS 17246.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14480797 14481457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14497226 14497357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14499049 14499410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14505345 14505587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1398 nt):
ATGCAACTCTTGAGAGCACTAGGAGTCTTCCATGTAAGCATGATCTTATTTAGTGCCACCCTGGGGACAG
GGATTTTTGTGACTCCTAAAGCAGTATTAAAATACTCCTCACTAAATATCCCTGTCTCCTTAAGTATTTG
GGCAGGCTGCGGCCTGCTGAGCATCATGAGTGCGCTCTGTAATGCAGAGATAGCAACCACCTACCCTTTG
AGTGGAGCATCTTATTATTTCCTCAAGAGAACTCTTGGATCCTCTGTTGCTTTTCTCAGTCTCTGGATTA
AACTTTTTGCTCACTTTCTAGGCATTGGTGCTCAGTGCTTGCTAATAGCTACTTCTGTAATCCAGTGTTT
CTATTCTGGGTGCCCAGCTCCAGAGCTACCAACGAAATGTCTGGCTTTGGCTATTTTGTGGTCATTTGGA
ATTGTCAGTGCTCGAGGGATAAAAACAGTGGCTTGGTTTAATACTGTCAGCAGTTTCATCAAGTTGAGTG
TCCTTTGTCTCATTTCTCTAACTGTGCTGTTAGTGAATGGCAAAAAGGAGAATGTGTCCAGGTTTGAGAA
TGCTTTGGATGCTGAACTTCCTAATGCCTCACAGATCGCAGATGCCATTCTCCAAGTGTCCTACTCATAT
CTAGGATCATCAGTCCTCATCGTCATAGCAGGAGAAATAAAACGGCCAACTGAAACAATTCCAAAAACAC
TAATTTATGGTATATCCATTGTGACTGTGTTATACTTACTGACTAATATATCATACTTGGCAGTTTTGAC
ATCCCAGGAAATCATCTTTTCAGATTCTGTTGGTGTCACATGGATGAACAGAGTCTTTCCTTCCATACAA
TGGATAAGTTCATTCTTGATCTCAGCTTTCCTACTTGGCTCCGTTTCTTGTGGAATAGTTTCTGCATCAA
GAGTATTCTACTCTGCAAGTCAAGAGGGAGAATTTCCTTCTATCTACTCAATGCTTAATGATCATCACTC
ACCAGCTGTAGCTGACATCCAGATTGTTATTTTATCTTCTGTTGCAATAATATCTTCAAGTATCATCTAT
TTAGTGAAATATGTTAGTCTAGGATCATTTTGTATAAATTTGCTGCAAATGATCGGGTTGCTTAAGATAA
GGTACCAGAACCCTGATATACCAAGACCTTATAAGGTGTGGCTGCCATTTATATTTGGATCTATAGCTTT
ATCACTTTTCCTCATTTTCACACCAGTGATTCAGTCTCCTAGTATAGAGCATGTCTATCAAGTTGTGTTT
CTTTTTTGTGGGTTTCTGTGTTATTGGCTTCAAGCTAACCTTAATGGACATGCTACTTGTTTTGACACAA
TCACTTGCTACTGCCAATTACTTTTCAATATCTCCCCATCTGAAGATCCAGAAGAACAGAAAAATTAA

Translation (465 aa):
MQLLRALGVFHVSMILFSATLGTGIFVTPKAVLKYSSLNIPVSLSIWAGCGLLSIMSALCNAEIATTYPL
SGASYYFLKRTLGSSVAFLSLWIKLFAHFLGIGAQCLLIATSVIQCFYSGCPAPELPTKCLALAILWSFG
IVSARGIKTVAWFNTVSSFIKLSVLCLISLTVLLVNGKKENVSRFENALDAELPNASQIADAILQVSYSY
LGSSVLIVIAGEIKRPTETIPKTLIYGISIVTVLYLLTNISYLAVLTSQEIIFSDSVGVTWMNRVFPSIQ
WISSFLISAFLLGSVSCGIVSASRVFYSASQEGEFPSIYSMLNDHHSPAVADIQIVILSSVAIISSSIIY
LVKYVSLGSFCINLLQMIGLLKIRYQNPDIPRPYKVWLPFIFGSIALSLFLIFTPVIQSPSIEHVYQVVF
LFCGFLCYWLQANLNGHATCFDTITCYCQLLFNISPSEDPEEQKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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