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Report for CCDS17242.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17242.1 Public Mus musculus 3 Zfand1 23 108 98 CCDS HistoryNCBI Gene:66361Re-query CCDS DB by CCDS ID:17242.1Re-query CCDS DB by GeneID:66361See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17242.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037839.11 ENSMUSP00000037459.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037839.11Link to Ensembl Protein Viewer:ENSMUSP00000037459.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000037839Re-query CCDS DB by Protein ID:ENSMUSP00000037459
Original member NCBI NM_025512.3 NP_079788.2 Updated not alive Link to Nucleotide Sequence:NM_025512.3Link to Protein Sequence:NP_079788.2Re-query CCDS DB by Nucleotide ID:NM_025512Re-query CCDS DB by Protein ID:NP_079788
Current member NCBI NM_025512.4 NP_079788.2 Accepted alive Link to Nucleotide Sequence:NM_025512.4Link to Protein Sequence:NP_079788.2Re-query CCDS DB by Nucleotide ID:NM_025512Re-query CCDS DB by Protein ID:NP_079788Link to BLAST:NP_079788.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079788.2 268 Q8BFR6 268 100% 0 0

Chromosomal Locations for CCDS 17242.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 10340735 10340905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10340994 10341149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10344801 10344922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10345935 10346026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10346110 10346237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10347165 10347204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10348510 10348552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 10351242 10351296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (807 nt):
ATGGCGGAGTTGGACATTGGGCAGCACTGCCAGGTGCAGCACTGCCGGCAGCGAGATTTTCTTCCATTTG
TGTGTGATGGTTGTTCAGGAATATTTTGCCTTGAACACAGAAGCAAGGACTCTCATGGTTGTTCTGAGGT
GAATGTAGTCAAGGAGAGACCAAAGACAGATGAACACAAATCTTACTCATGCTCTTTCAAGGGCTGCACT
GACGTAGAGCTTGTGGCAGTGATCTGTCCTTACTGTGAGAAGAACTTTTGCCTGAGACACCGTCATCAGT
CGGATCATGACTGTGAAAAGCTGGAAGTCGCAAAGCCTCGAATGGCTGCCACACAGAAACTTGTCAGAGA
CATTGTCGATGCCAAGACAGGAGGGGCAGCAAGTAAGGGACGGAAAGGCGCAAAAAGTAGCGGAACAGCG
GCGAAGGTGGCGCTGATGAAGCTAAAGATGCACGCTGATGGGGATAAGTCCCTGCCGCAGACAGAAAGAA
CATACTTCCAGGTCTACTTGCCAAAGGGGAGCAAGGAAAAAAGCAAAGCCATGTTCTTTTGCCTGCGGTG
GAGCATCGGGAAGGTTGTGGACTTTGCAGCTTCTCTCGCTAATCTCAGGAATGAAAACAACAAGCTGACA
GCGAAGAAGCTGAGGCTGTGTCATGTCCCTTCAGGAGAAGCCCTGCCATTGGATCACACATTGGAAAGGT
GGATCACGAAGGAGGAGTGCCCTTTATATAATGGAGGAAATGTTATCTTGGAATATCTTAACGATGAAGA
ACAGTTTTTAAAAAATGTTGACTCTTACTTGGAATAG

Translation (268 aa):
MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHKSYSCSFKGCT
DVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVRDIVDAKTGGAASKGRKGAKSSGTA
AKVALMKLKMHADGDKSLPQTERTYFQVYLPKGSKEKSKAMFFCLRWSIGKVVDFAASLANLRNENNKLT
AKKLRLCHVPSGEALPLDHTLERWITKEECPLYNGGNVILEYLNDEEQFLKNVDSYLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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